PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03147g02010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 580aa    MW: 65014.3 Da    PI: 8.8746
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03147g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.3e-083984282454
                               S--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  24 ypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               yp+ +++  LAk++gL+ +qV++WF N R +
  Niben101Scf03147g02010.1 398 YPTDTDKVMLAKQTGLSRNQVSNWFINARVR 428
                               9****************************88 PP
2BELL81.41.2e-261672201972
                      BELL  19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                               V +rYkqy++qlq+v+ sFe vaglg+a+p+++lAlk++S+hF cLk+ai++q+
  Niben101Scf03147g02010.1 167 VFQRYKQYHQQLQMVVTSFESVAGLGNAAPFANLALKTMSKHFNCLKNAITDQL 220
                               789************************************************997 PP
3BELL81.11.5e-262803331972
                      BELL  19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                               V +rYkqy++qlq+v+ sFe vaglg+a+p+++lAlk++S+hF cLk+ai++q+
  Niben101Scf03147g02010.1 280 VFQRYKQYHQQLQMVVTSFESVAGLGNAAPFANLALKTMSKHFNCLKNAITDQL 333
                               789************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-23121218IPR006563POX domain
PfamPF075267.6E-22167217IPR006563POX domain
SMARTSM005747.5E-8225331IPR006563POX domain
PfamPF075267.0E-22280330IPR006563POX domain
CDDcd000861.51E-9380433No hitNo description
SMARTSM003892.8E-6380436IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-17393436IPR009057Homeodomain-like
SuperFamilySSF466891.45E-11396438IPR009057Homeodomain-like
PfamPF059202.5E-13397428IPR008422Homeobox KN domain
PROSITE profilePS5007110.932398432IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR VLVDDNLQLQ NYAPYYDPSI IPSDLPTFQE INGTPFLYTP  60
QNLRFLDQSI RTSGEIMMHN SSNNNTNGQG LSLSLSCLHH NSTTNHDLLS KSSCVPLGPF  120
TGYSLILKRS RFLKPAQLLL EELCDVGREK LAADDFTLID PIHENIVFQR YKQYHQQLQM  180
VVTSFESVAG LGNAAPFANL ALKTMSKHFN CLKNAITDQL LFTNESRHGQ INSEKDLIPR  240
VGKGLYCHKP DKIHNNAGFA DRTQPVWRPQ RGLPERAVTV FQRYKQYHQQ LQMVVTSFES  300
VAGLGNAAPF ANLALKTMSK HFNCLKNAIT DQLLFTNESR HGQINSEKDL IPRVGKGLYC  360
HKPDKIHNNA GFADRTQPVW RPQRGLPERA VTVLRACYPT DTDKVMLAKQ TGLSRNQVSN  420
WFINARVRLW KPMVEEIHML ETKEAHNKDS QRDGQNSNNN SIEHFPTSNS HAACETPSAS  480
APRLQDTPSK RTRNNFPMGN ADSISLSYGN LSTGTGGVSL TLGLHQNTGI ALSEPFPINA  540
ARRFGIDANS DRFMVGGFEE QNGQFGRNIV GGQFLHDFAG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249152.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM83e-73BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A1J6IM030.0A0A1J6IM03_NICAT; Bel1-like homeodomain protein 9
STRINGXP_009606015.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-68TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]