PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03145g01006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 239aa    MW: 27881.3 Da    PI: 6.049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03145g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-162368146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                              rg+WT eEd ll++++   G g+W++ a++ g++Rt+k+c++rw k
  Niben101Scf03145g01006.1 23 RGPWTLEEDNLLIHYISTNGEGRWNALAKCAGLKRTGKSCRLRWSK 68
                              89******************************************65 PP

2Myb_DNA-binding29.51.7e-0965872346
                              -HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                              +W++Ia++++ gRt++++k++w++
  Niben101Scf03145g01006.1 65 RWSKIAQHLP-GRTDNEIKNYWRT 87
                              4*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4661874IPR017930Myb domain
SuperFamilySSF466891.84E-182085IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-172166IPR009057Homeodomain-like
SMARTSM007171.4E-132291IPR001005SANT/Myb domain
PfamPF002492.1E-142367IPR001005SANT/Myb domain
CDDcd001673.22E-102587No hitNo description
Gene3DG3DSA:1.10.10.603.5E-116788IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSKNIVIMSN NSSNEDDQFE LRRGPWTLEE DNLLIHYIST NGEGRWNALA KCAGLKRTGK  60
SCRLRWSKIA QHLPGRTDNE IKNYWRTRVQ KQARQLKVDC NSKKFVEAIK SLWVPRLLEK  120
MEQSSSIEKH NPSLLTPLIN NQESYDKENS KMYSTDSMNI LKSQPDEMTQ DFTIYNNSVQ  180
NECYHVESIS QQPKFSSQEL SISECEVAEA HWFSDEMAAA SLWNMDEFWQ FRKLGDIDI
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256818.11e-164PREDICTED: transcription factor MYB108-like
SwissprotQ9C9G73e-58MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1J6I9Z51e-163A0A1J6I9Z5_NICAT; Transcription factor myb108
STRINGXP_009797951.11e-163(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-60myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]