PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03145g01006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27881.3 Da PI: 6.049 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.5e-16 | 23 | 68 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+WT eEd ll++++ G g+W++ a++ g++Rt+k+c++rw k Niben101Scf03145g01006.1 23 RGPWTLEEDNLLIHYISTNGEGRWNALAKCAGLKRTGKSCRLRWSK 68 89******************************************65 PP | |||||||
2 | Myb_DNA-binding | 29.5 | 1.7e-09 | 65 | 87 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia++++ gRt++++k++w++ Niben101Scf03145g01006.1 65 RWSKIAQHLP-GRTDNEIKNYWRT 87 4*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.466 | 18 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.84E-18 | 20 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-17 | 21 | 66 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 22 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 23 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.22E-10 | 25 | 87 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-11 | 67 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSKNIVIMSN NSSNEDDQFE LRRGPWTLEE DNLLIHYIST NGEGRWNALA KCAGLKRTGK 60 SCRLRWSKIA QHLPGRTDNE IKNYWRTRVQ KQARQLKVDC NSKKFVEAIK SLWVPRLLEK 120 MEQSSSIEKH NPSLLTPLIN NQESYDKENS KMYSTDSMNI LKSQPDEMTQ DFTIYNNSVQ 180 NECYHVESIS QQPKFSSQEL SISECEVAEA HWFSDEMAAA SLWNMDEFWQ FRKLGDIDI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256818.1 | 1e-164 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9C9G7 | 3e-58 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A1J6I9Z5 | 1e-163 | A0A1J6I9Z5_NICAT; Transcription factor myb108 | ||||
STRING | XP_009797951.1 | 1e-163 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 1e-60 | myb domain protein 62 |
Publications ? help Back to Top | |||
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