PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03138g01021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10172.6 Da PI: 9.9622 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1e-07 | 29 | 61 | 15 | 47 |
HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +++G+g+W++I++ + +Rt+ q+ + qky Niben101Scf03138g01021.1 29 VLEKYGKGDWRSISSNVVVTRTPTQVATHAQKY 61 689*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 6.5E-10 | 25 | 64 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.87E-9 | 25 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.52E-5 | 25 | 62 | No hit | No description |
Pfam | PF00249 | 1.9E-6 | 26 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 29 | 59 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MDEGGGQAIR TRPVLYPEII ADRWLFLIVL EKYGKGDWRS ISSNVVVTRT PTQVATHAQK 60 YFITQQAMKK EGKRSSIHDI TTAVDTNSHL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592760.1 | 4e-33 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_009795456.1 | 4e-33 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016443719.1 | 4e-33 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016473251.1 | 4e-33 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 8e-24 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A1S3XV16 | 9e-32 | A0A1S3XV16_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1S4A9J2 | 8e-32 | A0A1S4A9J2_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U7Y0L8 | 8e-32 | A0A1U7Y0L8_NICSY; transcription factor DIVARICATA-like | ||||
STRING | XP_009795456.1 | 1e-32 | (Nicotiana sylvestris) | ||||
STRING | XP_009592760.1 | 1e-32 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 7e-29 | MYB family protein |
Publications ? help Back to Top | |||
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