PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03092g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 230aa    MW: 25665.9 Da    PI: 7.3135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03092g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-164393155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              + y+GVr++  + +Wv+e+r+ps+   +kr++lg++ tae+Aa a++ a+++l+g
  Niben101Scf03092g00007.1 43 PVYRGVRRRN-NDKWVCELREPSK---QKRIWLGSYPTAEMAACAHDVAALALRG 93
                              68*****887.8*********964...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-114393IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2044103IPR016177DNA-binding domain
PROSITE profilePS5103220.98244101IPR001471AP2/ERF domain
SMARTSM003802.7E-2644107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-2844103IPR001471AP2/ERF domain
CDDcd000186.84E-2745103No hitNo description
PRINTSPR003672.5E-64556IPR001471AP2/ERF domain
PRINTSPR003672.5E-66783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNNSSSRSHV RVAVSDEEDN NMLALRKPKK RAGRKKFKET RHPVYRGVRR RNNDKWVCEL  60
REPSKQKRIW LGSYPTAEMA ACAHDVAALA LRGPLATLNF ADSAWRLPVL VSKDPKDLRH  120
AAAKAAEAFR PGEETDVNPR VAANTANGSK EMKAAAEEDY NCMQNTVAAE NVLCSNNSCS  180
EVGMVGTQEW QANMEERSLF SPNPCLLGSC FSWDDDVESD VEVSLWCYSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019260743.11e-150PREDICTED: dehydration-responsive element-binding protein 1F-like
TrEMBLA0A314LD181e-149A0A314LD18_NICAT; Dehydration-responsive element-binding protein 1f
STRINGXP_009777001.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.15e-35ERF family protein