PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03064g05001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 266aa    MW: 30826.7 Da    PI: 6.0543
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03064g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.3e-151461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT++Ed +l+  ++q G  +W++ ++  g+ R++k+c++rw +yl
  Niben101Scf03064g05001.1 14 KGPWTPDEDRILISFIQQNGHSNWRALPKLAGLLRCGKSCRLRWTNYL 61
                              79******************************99************97 PP

2Myb_DNA-binding49.97.3e-1667112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T+eE++ +++++++lG++ W++Ia+++  gRt++++k+ w+++l
  Niben101Scf03064g05001.1  67 RGNFTKEEEDTIIQLHEMLGNR-WSAIAAKLA-GRTDNEIKNVWHTHL 112
                               89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.229961IPR017930Myb domain
SuperFamilySSF466893.28E-2910108IPR009057Homeodomain-like
SMARTSM007179.9E-131363IPR001005SANT/Myb domain
PfamPF002492.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-231568IPR009057Homeodomain-like
CDDcd001673.50E-91661No hitNo description
PROSITE profilePS5129425.1462116IPR017930Myb domain
SMARTSM007171.6E-1466114IPR001005SANT/Myb domain
PfamPF002499.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2669117IPR009057Homeodomain-like
CDDcd001671.16E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTPD EDRILISFIQ QNGHSNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TKEEEDTIIQ LHEMLGNRWS AIAAKLAGRT DNEIKNVWHT HLKKRLKENS  120
KNHDSKGPTT SKSSNNSEVT IIKTQKRISP EPAPNSPQIS SSTEVSTVTL VDDHHMLTIK  180
QEEMESSEYF PEIDESFWTN ELSTANHWSS TDHVMAVDDQ ERQVQLRFSS FKEENVDMLT  240
TKMEDDMDFW YNVFIKTDDL PELPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-26121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-25121162105C-Myb DNA-Binding Domain
1msf_C1e-25121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261117.11e-169PREDICTED: myb-related protein Myb4-like
SwissprotQ9LTC42e-83MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A314LCF21e-167A0A314LCF2_NICAT; Myb-related protein myb4
STRINGXP_009601374.11e-167(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-82myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]