PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03050g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 432aa    MW: 48963.1 Da    PI: 6.7556
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03050g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.1e-093593961954
                               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  Niben101Scf03050g03007.1 359 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 396
                               554459******************************88 PP
2BELL1001.9e-32221292172
                      BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                               er+el  k+ kL++lleeV++rY+qy++ ++ + s Fe++ g g+ kpYt+lAl+a+SrhF cL+dai++qi
  Niben101Scf03050g03007.1 221 ERHELYVKIMKLITLLEEVERRYEQYYQHMEEITSTFEVIEGFGAGKPYTALALQAMSRHFSCLRDAIISQI 292
                               799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-27153290IPR006563POX domain
PfamPF075266.3E-37159288IPR006563POX domain
PROSITE profilePS5007111.985337400IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-27339414IPR009057Homeodomain-like
CDDcd000869.35E-11340401No hitNo description
SMARTSM003891.5E-9340404IPR001356Homeobox domain
SuperFamilySSF466891.37E-17345407IPR009057Homeodomain-like
PfamPF059202.9E-17357396IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MVSTDSPPPT HSSILHQFIN SDSISSQIGS QHFDIYQPGL SANTTSYQPP GVLSRSIEFV  60
NPTHFTTDSD VNNSRHLMDL LGASHDANQQ SQRLSLSLSS HSLVSSLHCR ERALSSSFTN  120
PSYITQETDQ RNNEFSFSAA AMNQSFSNVC GTESFVSAIG NSKYLKPTQS LLEELVCAGG  180
KTIDLSNEKF IRRLSRNSKK GSLSLRAKLK AEIPSNELFN ERHELYVKIM KLITLLEEVE  240
RRYEQYYQHM EEITSTFEVI EGFGAGKPYT ALALQAMSRH FSCLRDAIIS QIYVIRQKMP  300
RDVPKISSGL SHLSLFEKET LQNRMSLQQL GIIQSNRQAW RPIRGLPETS VAILRSWLFE  360
HFLHPYPNDS EKLMLASQTG LSKNQVSNWF INARVRLWKP MIEEMYKEEF AESSVDSETF  420
LNREGVTDSA EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16346404563Homeobox protein Meis2
3k2a_B6e-16346404563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761064.10.0PREDICTED: BEL1-like homeodomain protein 11 isoform X1
RefseqXP_009761065.10.0PREDICTED: BEL1-like homeodomain protein 11 isoform X1
RefseqXP_016434169.10.0PREDICTED: BEL1-like homeodomain protein 11
RefseqXP_016434177.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD16e-97BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A1S3X2L30.0A0A1S3X2L3_TOBAC; BEL1-like homeodomain protein 11
TrEMBLA0A1U7VFF60.0A0A1U7VFF6_NICSY; BEL1-like homeodomain protein 11 isoform X1
STRINGXP_009761064.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.15e-92BEL1-like homeodomain 11