PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03050g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 622aa    MW: 69800.7 Da    PI: 5.5116
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03050g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-094114481954
                               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  Niben101Scf03050g03006.1 411 FEHflHPYPKDSEKIMLARQTGLTRSQVANWFINARVR 448
                               554459******************************88 PP
2BELL121.43.8e-39277348172
                      BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                               +r++l++k +kL s+l+eVd+rYk y++q+q+v+ssFe+vaglg+akpYtslAlk+iSr+FrcL+dai++qi
  Niben101Scf03050g03006.1 277 DRHDLESKMTKLFSMLNEVDRRYKEYYQQMQVVVSSFEMVAGLGAAKPYTSLALKTISRQFRCLRDAIKKQI 348
                               6899*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-54201346IPR006563POX domain
PfamPF075267.4E-47207344IPR006563POX domain
PROSITE profilePS5007112.341389452IPR001356Homeobox domain
SMARTSM003894.4E-10392456IPR001356Homeobox domain
CDDcd000861.63E-12392453No hitNo description
SuperFamilySSF466892.69E-17393458IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-28395458IPR009057Homeodomain-like
PfamPF059202.0E-17409448IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MSAYYSNLSN QREVLPMSFL PDQKFDSYHS AGLSASSIHL NQHSSTVSYS ELPAQNYGEV  60
QTIRGKDEML FIPPTSESGG MQPIGRSVNA SPNFLENSVM MDPRSFPTKQ FFVPNVEQSL  120
QNQGLSLSLG TQVPPSLHVY SYQDDYTNSS LSSLVGTHVL HSEQGSENKE SKVAEYLSFD  180
LSRGTTAANN PQNSMSLIDM NSGACSIYNS KYLKAAQDLL DEVVNVQEAL KQSDRLCNFN  240
LLGQDRSEEA DPKSSCSASG ISGDHNNSTK GELSPADRHD LESKMTKLFS MLNEVDRRYK  300
EYYQQMQVVV SSFEMVAGLG AAKPYTSLAL KTISRQFRCL RDAIKKQIQV TRRSLGEQGD  360
SQGERLYRLR YVDQQLRQQR SLQQFGMMRQ PWRPQRGLPE TAVSVLRAWL FEHFLHPYPK  420
DSEKIMLARQ TGLTRSQVAN WFINARVRLW KPMIEDMYKE EFGEAEAGSG ASPDRAPEES  480
KEKSIAENTG EEIPESFTTP AVNCSHLDPS KESSNVVTHV QNNSFITKFS FQDSAYEHEK  540
IDAVNTYHAS MLGDIMGNQV SLALRLQNSQ IDQQPISGRT QLAEDDKTGS TLDISKGEYY  600
YIDPVNQQER FSGPHLLSDF VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16398455158Homeobox protein Meis1
4xrs_B1e-16398455158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243801.10.0PREDICTED: BEL1-like homeodomain protein 7 isoform X1
RefseqXP_019243802.10.0PREDICTED: BEL1-like homeodomain protein 7 isoform X1
TrEMBLA0A1J6IJI00.0A0A1J6IJI0_NICAT; Bel1-like homeodomain protein 6
STRINGXP_009761063.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112582022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-102BEL1-like homeodomain 6