PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03049g06001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 282aa    MW: 32818.4 Da    PI: 8.0437
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03049g06001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-183481148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT+eEd  l+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  Niben101Scf03049g06001.1 34 RGPWTAEEDFTLINYIAHHGEGRWNSLAHCAGLKRTGKSCRLRWLNYL 81
                              89********************************************97 PP
2Myb_DNA-binding48.71.8e-1587130146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  Niben101Scf03049g06001.1  87 RGNITLEEQLVILELHSRWGNR-WSKIAEHLP-GRTDNEIKNYWRT 130
                               7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.2012985IPR017930Myb domain
SuperFamilySSF466897.55E-3131128IPR009057Homeodomain-like
SMARTSM007172.4E-153383IPR001005SANT/Myb domain
PfamPF002496.4E-173481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-233588IPR009057Homeodomain-like
CDDcd001671.80E-113681No hitNo description
SMARTSM007171.1E-1386134IPR001005SANT/Myb domain
PROSITE profilePS5129418.29486136IPR017930Myb domain
PfamPF002495.3E-1487130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2289135IPR009057Homeodomain-like
CDDcd001675.81E-1091130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDHHHVKVGL SRGGNYNKNK NHQQQHEEDM DLRRGPWTAE EDFTLINYIA HHGEGRWNSL  60
AHCAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLVILE LHSRWGNRWS KIAEHLPGRT  120
DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAATT NSNQVTINPN  180
NNNAINKPRM SENYSISMAA SSENSFGTPV SDPGDCYYNY APVISSNQQD YFHQSTQLGE  240
SLTIPTGLEF HTAMDQQNTS QWLDGGNFSD NLWNNEETWF IQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-252212815120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791846.10.0PREDICTED: transcription factor MYB108-like
RefseqXP_016511320.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY31e-89MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A1S4DCZ60.0A0A1S4DCZ6_TOBAC; transcription factor MYB108-like
TrEMBLA0A1U7XQE90.0A0A1U7XQE9_NICSY; transcription factor MYB108-like
STRINGXP_009791846.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.18e-86myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]