PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03049g02001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CAMTA | ||||||||
Protein Properties | Length: 339aa MW: 38654.7 Da PI: 7.9142 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 181 | 1.4e-56 | 20 | 135 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 +e ++rwl++ ei++iL n++k+ lt e++ rp+ gsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+v+vl+cyYa Niben101Scf03049g02001.1 20 QEtQHRWLRPAEICEILRNHHKFYLTPEPPVRPPGGSLFLFDRKVLRYFRKDGHQWRKKKDGKTVKEAHEKLKAGSVDVLHCYYA 104 4559********************************************************************************* PP CG-1 87 hseenptfqrrcywlLeeelekivlvhylev 117 h+e+n++fqrr+yw+Lee+le+ivlvhy+ev Niben101Scf03049g02001.1 105 HGENNENFQRRSYWMLEEKLEHIVLVHYREV 135 *****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.548 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.7E-75 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.0E-49 | 22 | 134 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MADTRRYLSD QPLDLEQILQ ETQHRWLRPA EICEILRNHH KFYLTPEPPV RPPGGSLFLF 60 DRKVLRYFRK DGHQWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGENNE NFQRRSYWML 120 EEKLEHIVLV HYREVIEGYR VGASVLQPIH PGQLLESPSS SPCFVSGLIV QESHTSSPSS 180 ADWKEQALSS ELYTGDSKGN EVNPLLVPAS GHFLPITSSF STEKPTGLVE FSRESFQLNP 240 QFGSFVSIDA QSSDRNLNVT LQKKFYSGHH NVADLLSSKL TYARLDAGKA VKDVASSRNR 300 LTITSGEVLE VLYSVLKIYS CSYWWPSCLF FFQGEAARC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506959.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 1-like isoform X1 | ||||
TrEMBL | A0A1S4D118 | 0.0 | A0A1S4D118_TOBAC; calmodulin-binding transcription activator 1-like isoform X1 | ||||
STRING | XP_009793082.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13716 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 7e-71 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |