PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03045g14001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 374aa    MW: 41017 Da    PI: 6.3584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03045g14001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-184190255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Niben101Scf03045g14001.1 41 RYRGVRRRP-WGRYAAEIRDPQ----SkERKWLGTFDTAEEAACAYDCAARAMRG 90
                              59*******.**********93....35*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-3341104IPR001471AP2/ERF domain
CDDcd000181.79E-294197No hitNo description
Gene3DG3DSA:3.30.730.103.1E-294197IPR001471AP2/ERF domain
PfamPF008472.4E-114190IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-214198IPR016177DNA-binding domain
PROSITE profilePS5103222.0234198IPR001471AP2/ERF domain
PRINTSPR003671.6E-94253IPR001471AP2/ERF domain
PRINTSPR003671.6E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MQDVIKPLQT NISSTLFKRC GNNKRPLNDR ATGGGCGATM RYRGVRRRPW GRYAAEIRDP  60
QSKERKWLGT FDTAEEAACA YDCAARAMRG VKARTNFVYP PPAHPTTITT DSFLNMPLLN  120
YTSTKAANRY HQLCLKDLPI RQFFQSSPQK SGGDVAGKTA LEQSNDSLNL LLFHEILNSS  180
SDLSLSSNTD LNMNINITPF DEQLPLMFDR NNTTSGATFA GSSSSSLVNQ SCLISAPKAT  240
SYSISSFAPM TPQKVKDDQT NNSSSVDSSM DFFPTVTSDS GFLEQALNGF FPKPTPMSSD  300
DICAKKSNED VKNHLGFCID ERGAAGISQL SSLPIIDQDF PVNMDQLSAE NLLGDMSFHY  360
SDLLNILAAK MENS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-203397571Ethylene-responsive transcription factor ERF096
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504445.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
TrEMBLA0A1S4CTK60.0A0A1S4CTK6_TOBAC; ethylene-responsive transcription factor ERF086-like
STRINGXP_009776614.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-13DORNROSCHEN-like