PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03038g13022.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 296aa    MW: 32624.4 Da    PI: 5.9573
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03038g13022.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.3e-36101012102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d+++++++sw+e+g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F
  Niben101Scf03038g13022.1  10 FLTKTYQLVDDATTDDVVSWNESGTTFVVWKTAEFAKDLLPTYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENF 85 
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                               k+g+kell+ i+r+k+
  Niben101Scf03038g13022.1  86 KRGQKELLTAIRRRKT 101
                               *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-38393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-60699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.35E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
CDDcd146860.00643148180No hitNo description
Gene3DG3DSA:1.20.5.3701.6E-4151183IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSQRTVPAPF LTKTYQLVDD ATTDDVVSWN ESGTTFVVWK TAEFAKDLLP TYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLTAIRRRK TVTPTPAGGK SVAPGTSASL  120
DNSGEDLGSS STSSPDSKNP GSVYTPGKSQ FADLSDENEK LKKENQMLSS ELTQAKKQCD  180
ELVAFLNQYV KVAPDMISRI MSQGTSGSSH GELVKEVIGG VKDLEAQGSD DDQDDDEKGD  240
TLKLFGVLLK ENKRKRGPDD NADISGSRGK MMKTVDYNLP WMKMSSASGE SNKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26610126131Heat shock factor protein 1
5d5v_B2e-26610126131Heat shock factor protein 1
5d5v_D2e-26610126131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229441.10.0PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-170HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A314KLD50.0A0A314KLD5_NICAT; Heat shock factor protein hsf24
STRINGXP_009797839.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.16e-85heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]