PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03035g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 428aa    MW: 48061.3 Da    PI: 7.8262
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03035g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.8e-09130150526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C+ f++ G C++Gd+C FaHg
  Niben101Scf03035g02003.1 130 VCSEFRK-GNCSRGDNCEFAHG 150
                               7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.59E-5124154IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6125151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45126152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5129152IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-7130150IPR000571Zinc finger, CCCH-type
SMARTSM003562.4160183IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287160184IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEGIYAEQHH HKFHPSHQLY LNKKSLRDID IPPRKLLSRR SNLSADLVSD MFMESPKSDS  60
DSLFQKFLPY NSLDEDDSDP YSSDHFRMYE FKVRRCTRSR SHDWTDCPFA HPGEKARRRD  120
PRRFHYSGTV CSEFRKGNCS RGDNCEFAHG VFECWLHPTR YRTEACKDGK NCKRKVCFFA  180
HTPRQLRVLP PSCHESSGSG SSPRNSPVEK KYRNLNHCCM FCHSVSVSPT STLMGMSHIS  240
PPMSPSLSPP LSPAKTQFSS PMSRYSDRFG SVESSCGMSQ LDHAGLMSYK DALTELVSSL  300
EAMNVNANHE ANSSSSAAVA VNNFDGKLPC LDVSFNNNNS NNYDDQHQFL LSPYSTPSPS  360
PVSSSRTKFY TRDFPSPSPV SSSGLSFSPV SSSNISFLED INNNATNRNY NDNGLGGPDF  420
GWVNDLLT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789499.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
RefseqXP_016489908.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
TrEMBLA0A1S4BLZ50.0A0A1S4BLZ5_TOBAC; zinc finger CCCH domain-containing protein 61-like
TrEMBLA0A1U7XRH60.0A0A1U7XRH6_NICSY; zinc finger CCCH domain-containing protein 61-like
STRINGXP_009789499.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-80C3H family protein