PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf03018g03003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 34229.7 Da PI: 9.2587 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 8.1e-17 | 61 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+q+G+ +W++Ia+++ gR++k+c++rw++ Niben101Scf03018g03003.1 61 RGHWRPHEDAKLRELVAQFGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 106 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.2e-16 | 113 | 156 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ +k++G++ W+ Iar ++ gRt++ +k++w+ Niben101Scf03018g03003.1 113 RRAFTEEEEERLLISHKMYGNK-WSMIARLFP-GRTDNAVKNHWHV 156 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.757 | 56 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-14 | 60 | 109 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.87E-28 | 61 | 154 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-15 | 61 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-27 | 62 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.08E-12 | 64 | 105 | No hit | No description |
PROSITE profile | PS51294 | 25.944 | 108 | 162 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-12 | 112 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 113 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.51E-9 | 115 | 155 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-20 | 115 | 161 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0071367 | Biological Process | cellular response to brassinosteroid stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MNSTAAFCAV QEMNFLLPCV KESHWLFNQM EDERGTHKLK DEKEEVDLLG MNKSNTKLCA 60 RGHWRPHEDA KLRELVAQFG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFTEEE 120 EERLLISHKM YGNKWSMIAR LFPGRTDNAV KNHWHVIMAR KHREQNSVYR RRKPSHLRQI 180 NFPHIVSASN LNSDSTISSN NNNIDDHQSA STCTDLSLTP SSKVIIPSFL MSRFTPMQHH 240 HQEILESNKD TNSEVSASES VANNMTNVNI YDNGKQVKQM KTKTMHFIDF LGVGAT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-32 | 60 | 161 | 6 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root. Counteracts brassinosteroid (BR)-mediated cell division in the QC cells (PubMed:24981610). Regulates maternally seed size, especially before the heart stage, promoting both endothelial cells expansion and cell number in the outer integument layer of the seed coat (PubMed:23911125). Modulates the expression of genes involved in cell wall metabolism such as cell division and expansion (PubMed:23911125, PubMed:24981610). Negative regulator of flowering via the repression of FT transcription (PubMed:25343985). {ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00516 | DAP | Transfer from AT5G17800 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Levels follow a circadian cycle with a progressive decrease during the day time (at protein level) (PubMed:25343985). Down-regulated by brassinosteroids (BRs) in a dose- and time-dependent manner. Repressed by BES1. Auto-activation of expression (PubMed:24981610). Targeted to 26S proteasomal degradation by the CULLIN3 (CUL3)-based E3 ligases CRL3(BPMs) (PubMed:25343985). {ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009782999.1 | 0.0 | PREDICTED: transcriptional activator Myb-like | ||||
Refseq | XP_016513931.1 | 0.0 | PREDICTED: transcriptional activator Myb-like | ||||
Swissprot | Q6R053 | 7e-76 | MYB56_ARATH; Transcription factor MYB56 | ||||
TrEMBL | A0A1S4DKL0 | 0.0 | A0A1S4DKL0_TOBAC; transcriptional activator Myb-like | ||||
TrEMBL | A0A1U7X7W0 | 0.0 | A0A1U7X7W0_NICSY; transcriptional activator Myb-like | ||||
STRING | XP_009782999.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17800.1 | 3e-76 | myb domain protein 56 |
Publications ? help Back to Top | |||
---|---|---|---|
|