PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03005g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 348aa MW: 38747.9 Da PI: 6.8834 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ Iar g+ R++k+c++rw +yl Niben101Scf03005g00005.1 26 KGLWSPEEDEKLMNYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 73 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.6e-16 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+e +v+++ lG++ W+ Ia++++ gRt++++k++w++ Niben101Scf03005g00005.1 79 RGAFSPQEEEHIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 122 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.768 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.84E-28 | 24 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-11 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-14 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.68E-10 | 29 | 73 | No hit | No description |
PROSITE profile | PS51294 | 24.29 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 79 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.55E-10 | 81 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 81 | 129 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MRKPDHPSIL MKEKGNNNNT KAKLRKGLWS PEEDEKLMNY MLTNGQGCWS DIARNAGLQR 60 CGKSCRLRWI NYLRPDLKRG AFSPQEEEHI VHLHSILGNR WSQIAARLPG RTDNEIKNFW 120 NSTIKKRLKN NNSNSNNNTS SPNTSDSSSE PRALMGGIIP MQGHNLNHVM AAICMDNSTS 180 SSNHFNPFPQ LDNTNYDIIG AGLYNFPSCL GQFDGDGGVV DYGVVENYST MGLGSDFSVP 240 TLEGGGNKSM GGQINNNVNF SSSSNITAAN IDYNSLIEKK TNGKNSQQLM SNESGDQSLK 300 VEDYMVGYGN HHHHQHHWHG ESLRIGEFDW EGLLANVSSL PYLDFPVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 24 | 128 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612035.1 | 0.0 | PREDICTED: myb-related protein Hv33-like | ||||
Refseq | XP_016432968.1 | 0.0 | PREDICTED: myb-related protein Hv33-like | ||||
TrEMBL | A0A1S3WZJ0 | 0.0 | A0A1S3WZJ0_TOBAC; myb-related protein Hv33-like | ||||
STRING | XP_009612035.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 2e-72 | myb domain protein 83 |