PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02992g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 109aa MW: 12433.2 Da PI: 4.8368 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.1 | 6.3e-20 | 9 | 43 | 1 | 35 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35 k+i+n + rqvtfskRr g++KKAeELSvLCda++ Niben101Scf02992g01001.1 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADA 43 68******************************985 PP | |||||||
2 | K-box | 41.4 | 5.9e-15 | 45 | 103 | 39 | 97 |
K-box 39 lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 Ge+L+ Ls++eLqqLe+ Le +l+++ + K + ++++i++lq+k +l een++L+++ Niben101Scf02992g01001.1 45 EGEELQGLSIEELQQLERCLEAGLTRVIEGKGDKIMTEINQLQQKGMQLMEENERLKQQ 103 5*******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-21 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.203 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-19 | 1 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-18 | 10 | 43 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.057 | 14 | 109 | IPR002487 | Transcription factor, K-box |
PRINTS | PR00404 | 6.3E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.7E-13 | 46 | 103 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADANEGEELQ GLSIEELQQL 60 ERCLEAGLTR VIEGKGDKIM TEINQLQQKG MQLMEENERL KQQGDGDIQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023887238.1 | 3e-37 | MADS-box protein JOINTLESS-like | ||||
Swissprot | Q9FUY6 | 2e-24 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A199VXJ5 | 7e-31 | A0A199VXJ5_ANACO; MADS-box transcription factor 22 (Fragment) | ||||
STRING | VIT_18s0001g07460.t01 | 2e-28 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.2 | 6e-32 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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