PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02972g05013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 296aa    MW: 34044.3 Da    PI: 9.8838
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02972g05013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.4e-141461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W+t Ed+ll +++k+ G g+W+  +++  + R++k+c++rw +yl
  Niben101Scf02972g05013.1 14 KGPWSTKEDLLLSNYIKENGEGQWRNLPKKAELLRCGKSCRLRWMNYL 61
                              79******************************99************97 PP
2Myb_DNA-binding51.52.4e-1667112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++++E++l+++++ +lG++ W++Ia ++  gRt++++k++w+++l
  Niben101Scf02972g05013.1  67 RGNFSQDEEDLIIRLHSLLGNR-WSLIAGRLS-GRTDNEIKNYWNTHL 112
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-20564IPR009057Homeodomain-like
PROSITE profilePS5129415.135961IPR017930Myb domain
SuperFamilySSF466899.56E-2711108IPR009057Homeodomain-like
SMARTSM007173.4E-101363IPR001005SANT/Myb domain
PfamPF002493.0E-121461IPR001005SANT/Myb domain
CDDcd001671.21E-71661No hitNo description
PROSITE profilePS5129425.16862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2565117IPR009057Homeodomain-like
SMARTSM007173.4E-1566114IPR001005SANT/Myb domain
PfamPF002498.7E-1567112IPR001005SANT/Myb domain
CDDcd001679.28E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRAPCCAKE GLRKGPWSTK EDLLLSNYIK ENGEGQWRNL PKKAELLRCG KSCRLRWMNY  60
LRPGIKRGNF SQDEEDLIIR LHSLLGNRWS LIAGRLSGRT DNEIKNYWNT HLIKKLKSAG  120
IEPKVNKIFS KYCPKKEPKK QAKKEKPRKK QDKKLKNKKK KDQSLVQNTN YSPQVVFVPK  180
PIRISSCRNH GVEDIALLSA SSSDRCTRLP LCAGSADKSD HIGSYVRNLT DESKIKEVSF  240
IPCASNLFDE VPLDENMLEK VYEEYLQLLS EKCYFQDNQL DDHLLAGNVF DHSMLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23121185110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133149PKKEPKKQAKKEKPRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261444.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A314LBJ90.0A0A314LBJ9_NICAT; Transcription repressor myb5
STRINGXP_009625117.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-63myb domain protein 5