PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02940g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 290aa    MW: 31962.9 Da    PI: 8.6961
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02940g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.4e-1488132347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  Niben101Scf02940g00002.1  88 PWTEDEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 132
                               8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.40681137IPR017930Myb domain
SuperFamilySSF466891.35E-1683138IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-1784135IPR006447Myb domain, plants
SMARTSM007177.6E-1085135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1087132IPR009057Homeodomain-like
PfamPF002495.5E-1188132IPR001005SANT/Myb domain
CDDcd001675.48E-988133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSSACCDESS AEAVAAGGVE GEIMLFGVRV KVDPMRKSVS LNNLSQYEQP NANNNNESSK  60
VVEEGYTSAD DAVQHQSNSG RERKRGVPWT EDEHKLFLLG LQKVGKGDWR GISRNFVKTR  120
TPTQVASHAQ KYFLRRSNLN RRRRRSSLFD ITTDSVSVMP IEEGKNNQEI PVPPVLAPPT  180
LPTTIEATKT NAFPVAPIML PAQIDQSRES PTLLQRNQVN SYMPVRPLPT LSMPNPSTVV  240
DLNVNQNSEV EPLSLRLSLS LDQGQTSSTR HSAFKVMSSF SNGENIISVA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802855.10.0PREDICTED: transcription factor MYB1R1-like
RefseqXP_016493779.10.0PREDICTED: transcription factor MYB1R1-like
SwissprotQ2V9B01e-130MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A1S4BYC00.0A0A1S4BYC0_TOBAC; transcription factor MYB1R1-like
TrEMBLA0A1U7YVS40.0A0A1U7YVS4_NICSY; transcription factor MYB1R1-like
STRINGXP_009802855.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25742351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.23e-58MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]