PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02937g06003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 10695 Da PI: 9.8541 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.8 | 3.7e-11 | 11 | 55 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rW+++E+ ++ + ++lG+g+W+ Ia+++ R q+ s+ +ky Niben101Scf02937g06003.1 11 RWSEDEHRAFLIGLEKLGKGNWAGIAKEIVPSRAHTQVASHAHKY 55 9*****************************9************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.507 | 4 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.39E-13 | 7 | 60 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-13 | 7 | 58 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.0E-6 | 8 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-10 | 10 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-9 | 11 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-5 | 11 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MGRRNSNKET RWSEDEHRAF LIGLEKLGKG NWAGIAKEIV PSRAHTQVAS HAHKYFERLE 60 AEKENERAVI KRQRSSVFDI NLAEESCRSS SPM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016442573.1 | 8e-52 | PREDICTED: myb-like protein J | ||||
Swissprot | Q9FKF9 | 9e-20 | M5162_ARATH; Probable transcription factor At5g61620 | ||||
TrEMBL | A0A1S3XRK0 | 2e-50 | A0A1S3XRK0_TOBAC; myb-like protein J | ||||
STRING | XP_009802911.1 | 7e-51 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13677 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 4e-22 | MYB_related family protein |
Publications ? help Back to Top | |||
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