PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02911g07002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 527aa    MW: 58806.3 Da    PI: 5.4669
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02911g07002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.53.5e-1291585272374
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                               +elLl+cAeavs+  + +a+ l++ l++ +s +g+pmqRl ay++e+++arl++s+s +yk+l+++e +    se l++++++++
  Niben101Scf02911g07002.1 158 KELLLTCAEAVSDAYFPAAEVLMNVLEQKVSISGEPMQRLSAYMLEGIRARLFSSGSIIYKKLKCKEPT---NSELLSYMQVLYH 239
                               689*****************************************************************9...89*********** PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                               ++P++kf++  aN +I ea+ +e+r+HiiDf+i qG QW+ L+q+La Rp+gpps+RiTgv++++s   +   l+ +gerLak+A
  Niben101Scf02911g07002.1 240 ICPYYKFAYTSANVMIDEAMTNENRIHIIDFQIAQGSQWMFLIQSLARRPSGPPSVRITGVDDSQSAhaRGGGLQLVGERLAKVA 324
                               ***************************************************************9988889999************ PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                               e+++vpfef++ +a + +++ele+L +++gEalaVn+ + lh+++desvs++++rd++L+lvkslsPk+v++veqe+++n++ F+
  Niben101Scf02911g07002.1 325 ESCRVPFEFHA-AAISGSEVELENLYIRHGEALAVNFPYILHHMPDESVSTANHRDRLLRLVKSLSPKIVTLVEQESNTNTAAFV 408
                               ***********.8999********************************************************************* PP

                      GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                                rf e+l+yy+a+f+s++a+ pr++++ri+ E+++++r++vn++acega+r+erhe ++kW++rl++aGF+p p+s ++ + ++ 
  Niben101Scf02911g07002.1 409 PRFRETLDYYTAMFESIDAGRPRDDKQRISAEEHCVARDVVNIIACEGADRVERHELFGKWSMRLKMAGFTPCPVSPSVGEAIND 493
                               ************************************************************************************* PP

                      GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +l+ ++s+ yr+ e++g+l+lgWk+r+L ++SaWr
  Niben101Scf02911g07002.1 494 MLKDYSSN-YRIVESKGALYLGWKNRALATTSAWR 527
                               ******77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.622131508IPR005202Transcription factor GRAS
PfamPF035141.2E-126158527IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MFLIQVSQRL MEKVEQYYSP YHVFNNNSND TSSSGTQFSF QSQNEQFFTL DSLPAAGYVI  60
YDSSPAVSVS SNWSPFSPHY SQSTILDQHH SSDNTYGSPL SGCSGVDGVL SEMANKLLGP  120
ESDIDESSSC SFNDVVSEPS SLTKWNRVLE IAPSLDVKEL LLTCAEAVSD AYFPAAEVLM  180
NVLEQKVSIS GEPMQRLSAY MLEGIRARLF SSGSIIYKKL KCKEPTNSEL LSYMQVLYHI  240
CPYYKFAYTS ANVMIDEAMT NENRIHIIDF QIAQGSQWMF LIQSLARRPS GPPSVRITGV  300
DDSQSAHARG GGLQLVGERL AKVAESCRVP FEFHAAAISG SEVELENLYI RHGEALAVNF  360
PYILHHMPDE SVSTANHRDR LLRLVKSLSP KIVTLVEQES NTNTAAFVPR FRETLDYYTA  420
MFESIDAGRP RDDKQRISAE EHCVARDVVN IIACEGADRV ERHELFGKWS MRLKMAGFTP  480
CPVSPSVGEA INDMLKDYSS NYRIVESKGA LYLGWKNRAL ATTSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5716452626378Protein SCARECROW
5b3h_A2e-5716452625377Protein SCARECROW
5b3h_D2e-5716452625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245469.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1J6J7J40.0A0A1J6J7J4_NICAT; Scarecrow-like protein 13
STRINGXP_009804066.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13