PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02910g01031.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 272aa    MW: 30840.5 Da    PI: 6.2376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02910g01031.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.3e-141562148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W+++Ed++l +++ ++G g+W++++   g+ R +k+c++rw +yl
  Niben101Scf02910g01031.1 15 KGLWSPDEDDKLNNYIIKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                              678*******************************************97 PP
2Myb_DNA-binding52.98.7e-1768113148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ +E+e ++ +++++G++ W+ Ia++++ gRt++++k++w++yl
  Niben101Scf02910g01031.1  68 RGAFSLDEQETILTLHAMFGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 113
                               89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-21965IPR009057Homeodomain-like
PROSITE profilePS5129415.8141062IPR017930Myb domain
SuperFamilySSF466892.46E-2813109IPR009057Homeodomain-like
SMARTSM007176.2E-101464IPR001005SANT/Myb domain
PfamPF002491.3E-121562IPR001005SANT/Myb domain
CDDcd001671.06E-81862No hitNo description
PROSITE profilePS5129426.3363117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2566117IPR009057Homeodomain-like
SMARTSM007171.6E-1567115IPR001005SANT/Myb domain
PfamPF002491.5E-1568113IPR001005SANT/Myb domain
CDDcd001678.01E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSCKLVEKTK QKHKKGLWSP DEDDKLNNYI IKHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGA FSLDEQETIL TLHAMFGNKW SQIAQHLPGR TDNEIKNHWH SYLKKRVAKM  120
AQQITTSGNQ ESSSSSKKLI TQNSSVDSFE HIDGSLVESD QSADIPREPQ KSNLPKVLFA  180
EWLSLDQFNG QDNFDLSNNN FGYNNSELQD VIIHTIPMSG GSYVNGIIQE VNNGIVDDIF  240
QPQLKFEESI SANGFEEFMS GEFSINDDVM YI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22151177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763294.10.0PREDICTED: transcription factor LAF1-like
RefseqXP_016442378.10.0PREDICTED: transcription factor LAF1-like
TrEMBLA0A1S3XQZ60.0A0A1S3XQZ6_TOBAC; transcription factor LAF1-like
TrEMBLA0A1U7VLR80.0A0A1U7VLR8_NICSY; transcription factor LAF1-like
STRINGXP_009763294.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.13e-62myb domain protein 19