PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02842g01018.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 226aa MW: 26818.1 Da PI: 8.047

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02842g01018.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.1	4.7e-19	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++a+ g++R +k+c++rw +yl Niben101Scf02842g01018.1 18 KGPWTAEEDRLLIEYVNLHGEGRWNSVASLAGLKRNGKSCRLRWVNYL 65 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.289	13	69	IPR017930	Myb domain
SuperFamily	SSF46689	3.95E-23	16	101	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-17	17	67	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-18	18	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-24	19	72	IPR009057	Homeodomain-like
CDD	cd00167	9.73E-12	20	65	No hit	No description
PROSITE profile	PS50090	4.17	66	105	IPR017877	Myb-like domain
SMART	SM00717	0.2	70	107	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-9	73	109	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MNAFFDFSRL VNEEEWRKGP WTAEEDRLLI EYVNLHGEGR WNSVASLAGL KRNGKSCRLR 60 WVNYLRPDLK RGHITPYEEK IILELHAIWG NRTDNEIKNY WRTHFKKKFK KSSIDKCEKA 120 NARLIKRQKF QQQQQQQLNN QNDIKKLVAM FEENENNKVP NLSQGKQEMT FLYQNTADQE 180 QGGAFFYSSE ASSNYEDIMW DYGLWNLDDF NANLNIGVYD NSLPCM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-17	18	109	7	108	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486087.1	1e-122	PREDICTED: myb-related protein MYBAS1-like isoform X1
Refseq	XP_016486088.1	1e-122	PREDICTED: myb-related protein MYBAS2-like isoform X2
Refseq	XP_016486089.1	1e-122	PREDICTED: myb-related protein MYBAS2-like isoform X2
TrEMBL	A0A1S4BB37	1e-120	A0A1S4BB37_TOBAC; myb-related protein MYBAS1-like isoform X1
TrEMBL	A0A1S4BB92	1e-120	A0A1S4BB92_TOBAC; myb-related protein MYBAS2-like isoform X2
STRING	XP_009604711.1	1e-117	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13480.1	1e-57	myb domain protein 79