PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02831g07012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 547aa MW: 59571.5 Da PI: 8.644 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Niben101Scf02831g07012.1 98 FVCEICNKGFQRDQNLQLHRRGH 120 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00041 | 174 | 196 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Niben101Scf02831g07012.1 174 WKCEKCSKKYAVQSDWKAHSKTC 196 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 97 | 120 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.76E-6 | 97 | 120 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 98 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 98 | 120 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 100 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 139 | 169 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.9E-4 | 162 | 195 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.76E-6 | 169 | 194 | No hit | No description |
SMART | SM00355 | 140 | 174 | 194 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MIKGFMKQQN KPVVVEENMS NLTSASGEAA SVSSCNRNDN NNTITGGIYP PQYNFAHPNQ 60 QIQAQHQIKK KRNQPGNPDP GAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH 120 NLPWKLKQRT SKEIRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCEKCS 180 KKYAVQSDWK AHSKTCGTKE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITGNPILP 240 SQTGSSSHMN LQFQPSQFNS HEFPAAFSLK KEQQTGGFNL RSEIPPWLLT CQPLVGGGGP 300 EPGPPPSQPI DLSSSIFQST RFDQDYTQSH SQDLNPNPSP NFNPTGGLGS PHISATALLQ 360 KAAQMGATMS NKSSTVSAST TGPSPTMLMR PHQFHVSAAA VESVSHNTTD VGLNLSSRED 420 LTTGFFNSLA SYGNKAATIT ATDAAVAATV PITGPLTSAP SPCPTSFIMT SFSSANTTGF 480 EGSNFEDEFG GIGILNSTKN NDGNDDMTKD FLGLRPLSHT DIFNIAGLVN TTSNENHQSQ 540 NHKTWQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 170 | 231 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 170 | 231 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 136 | KLKQRTSKEIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016479409.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like | ||||
Refseq | XP_016479410.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like | ||||
Swissprot | Q8H1F5 | 1e-128 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A1S4ARV0 | 0.0 | A0A1S4ARV0_TOBAC; protein indeterminate-domain 7-like | ||||
STRING | XP_009774627.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-112 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
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