PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02831g04004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 274aa    MW: 31101.6 Da    PI: 7.6206
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02831g04004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.63e-182572148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Niben101Scf02831g04004.1 25 RGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 72
                              788*******************************************97 PP
2Myb_DNA-binding452.5e-1478120145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               rg+++ +E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  Niben101Scf02831g04004.1  78 RGSFSHQEAALIIELHGILGNR-WAQIAKHLP-GRTDNEVKNFWN 120
                               899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4372072IPR017930Myb domain
SMARTSM007171.1E-122474IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-2824119IPR009057Homeodomain-like
PfamPF002494.5E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-232575IPR009057Homeodomain-like
CDDcd001671.79E-122872No hitNo description
PROSITE profilePS5129424.32673127IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2476127IPR009057Homeodomain-like
SMARTSM007173.9E-1477125IPR001005SANT/Myb domain
PfamPF002494.6E-1378121IPR001005SANT/Myb domain
CDDcd001673.93E-1080120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
VEGASCFLWV VVSLWNLLLL QYSLRGLWSP EEDEKLIKYI TTYGHGCWSS VPKLAGLQRC  60
GKSCRLRWIN YLRPDLKRGS FSHQEAALII ELHGILGNRW AQIAKHLPGR TDNEVKNFWN  120
SSIKKKLLSH GTLSDFSMIF PNNLTTTNPN PSFDNFYPLN STPINLMPIN TNSPLILQVD  180
HQMNNNHLNG DLNLNPVVPS LINPLSFDSI SNDPTWFNFN YPHTQHDLDN FNQNVPLLPK  240
LSEMIKGNCG IVESIPPAAS QQIESMVLYS VLHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31241276108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231948.11e-163PREDICTED: transcription factor MYB26-like isoform X1
RefseqXP_019231949.11e-163PREDICTED: transcription factor MYB26-like isoform X2
TrEMBLA0A1J6L3R81e-161A0A1J6L3R8_NICAT; Transcription factor myb26
STRINGXP_009616294.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-68myb domain protein 26