PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02831g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 299aa    MW: 33337.4 Da    PI: 9.8619
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02831g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-083479646
                              HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
           Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                              + E+  l+ +v+++G+g+Wk I r        ++R+  ++k++w++
  Niben101Scf02831g03001.1 34 EHEEGALKAGVAKHGTGRWKNILRDPEfarflTNRSNIDLKDKWRN 79
                              578999***************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-93480IPR009057Homeodomain-like
SuperFamilySSF466896.91E-113582IPR009057Homeodomain-like
CDDcd116601.37E-153680No hitNo description
SMARTSM005267.7E-14136201IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.4E-14137212IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.539138206IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.07E-14139206IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.6E-10140199IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
LTKSGFNNIV DVLLLFPTAG FRHCRKSFWI LLREHEEGAL KAGVAKHGTG RWKNILRDPE  60
FARFLTNRSN IDLKDKWRNM GFSTAAQGSK DKSRFSRARP KTISALVPST VQTPLAITSA  120
PENDAMDGSP ESPQGRKNAP KYNDMIFEAL SSMKCSNGCD VGAIVGFIEQ RHEVPQNFRR  180
LLSSKLRKLV LKGKLERVQN CYKIKDATLE TKITTPKPKD VLLRSAPNSA VKVSCETMEE  240
AVGIAAYKIA DAEEKSFLAA EAVNNAERLS KMAEDAESML QLFKEIYEQC SRDQIVLLA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266071.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A314L0V30.0A0A314L0V3_NICAT; Telomere repeat-binding factor 4
STRINGXP_009616026.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-54MYB_related family protein