PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02821g14003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 315aa    MW: 35158.9 Da    PI: 7.3068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02821g14003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14112163155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Niben101Scf02821g14003.1 112 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 163
                               79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.68E-13110167No hitNo description
Gene3DG3DSA:4.10.280.101.0E-13110165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-16110178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.294111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-11112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-10117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MALEALSSNE LLNFIIYDTI SATPFTSNNL DPSSSENAAS GTLLLDHENG LLTLPQHFCG  60
HEQQYSTASV PETTTITTIR REKNLAVAQG SGRKKRRRRP KVCKNKEEAE NQRMTHIAVE  120
RNRRKQMNEH LAVLRSLMPE SYVQRGDQAS IVGGAIEFVK ELEHILQSLE AQKFLLLQQG  180
GGDGEGPIEK YFPTPFAQFF SYPQYTCSQL PNKYTSKSKA AIADIEVTLI DTHANFRILS  240
RRRLRQLSKL VAAFQSLYLS VLHLNVTTLD PLVLYSISAK VEEGCQLNSA DDIAGAVHHM  300
LRIIEEEAAT LSCQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298RKKRRRR
29398KKRRRR
3112123RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456410.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ56XR02e-76BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A1S3YWI70.0A0A1S3YWI7_TOBAC; transcription factor bHLH71-like
STRINGXP_009763212.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-64bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]