PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02812g01007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 35698.5 Da PI: 9.1301 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.3e-07 | 35 | 80 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 WT+eE + +++a + ++ ++ +a++++ +++l+++k +++ Niben101Scf02812g01007.1 35 QWTPEEKQVFKNALSVFNNPisppFFDYVASKLP-HKSLEEIKKYYL 80 7*********************************.**********97 PP | |||||||
2 | Myb_DNA-binding | 39.6 | 1.2e-12 | 147 | 191 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E++l++ + +++G+g+Wk+I+r+ +t+ q+ s+ qky Niben101Scf02812g01007.1 147 PWTEGEHQLFLMGLNRFGKGDWKSISRYYVVSKTPTQVASHAQKY 191 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.913 | 31 | 87 | IPR017884 | SANT domain |
SMART | SM00717 | 0.15 | 32 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.36E-7 | 34 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00119 | 36 | 83 | No hit | No description |
PROSITE profile | PS51294 | 15.494 | 139 | 196 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.06E-15 | 141 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-8 | 144 | 194 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.7E-16 | 145 | 194 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.6E-8 | 147 | 191 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.06E-8 | 147 | 192 | No hit | No description |
Pfam | PF00249 | 2.9E-10 | 147 | 191 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MESPEFLERS NSPESTFGLF SATPQANELV ARADQWTPEE KQVFKNALSV FNNPISPPFF 60 DYVASKLPHK SLEEIKKYYL ALFKDVEMEN PEPKNKAPVT DGHALEHDQQ NNYQVPQEDD 120 HSDMEAAQNG TPTPVENNRP RRRRGIPWTE GEHQLFLMGL NRFGKGDWKS ISRYYVVSKT 180 PTQVASHAQK YFGRRNSATP PERRRPSIND IQTVTLNPRA TTVTAQINNG RLADNNNNQG 240 PSLPMHYLYN FGGAMFGHNS HGNFGNFINR GEASGSSSFN MPLNNNNNDN NLRSPVSPRP 300 FLSMYLSSAA RNNNRV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019239824.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1J6J925 | 0.0 | A0A1J6J925_NICAT; Transcription factor myb1r1 | ||||
STRING | XP_009784767.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5234 | 20 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 5e-37 | MYB family protein |