PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02812g01007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 316aa    MW: 35698.5 Da    PI: 9.1301
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02812g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-073580345
                              SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                               WT+eE + +++a   + ++     ++ +a++++ +++l+++k +++
  Niben101Scf02812g01007.1 35 QWTPEEKQVFKNALSVFNNPisppFFDYVASKLP-HKSLEEIKKYYL 80
                              7*********************************.**********97 PP

2Myb_DNA-binding39.61.2e-12147191347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+ E++l++ + +++G+g+Wk+I+r+    +t+ q+ s+ qky
  Niben101Scf02812g01007.1 147 PWTEGEHQLFLMGLNRFGKGDWKSISRYYVVSKTPTQVASHAQKY 191
                               7*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.9133187IPR017884SANT domain
SMARTSM007170.153285IPR001005SANT/Myb domain
SuperFamilySSF466893.36E-73487IPR009057Homeodomain-like
CDDcd001670.001193683No hitNo description
PROSITE profilePS5129415.494139196IPR017930Myb domain
SuperFamilySSF466896.06E-15141195IPR009057Homeodomain-like
SMARTSM007173.7E-8144194IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.7E-16145194IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.6E-8147191IPR009057Homeodomain-like
CDDcd001674.06E-8147192No hitNo description
PfamPF002492.9E-10147191IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MESPEFLERS NSPESTFGLF SATPQANELV ARADQWTPEE KQVFKNALSV FNNPISPPFF  60
DYVASKLPHK SLEEIKKYYL ALFKDVEMEN PEPKNKAPVT DGHALEHDQQ NNYQVPQEDD  120
HSDMEAAQNG TPTPVENNRP RRRRGIPWTE GEHQLFLMGL NRFGKGDWKS ISRYYVVSKT  180
PTQVASHAQK YFGRRNSATP PERRRPSIND IQTVTLNPRA TTVTAQINNG RLADNNNNQG  240
PSLPMHYLYN FGGAMFGHNS HGNFGNFINR GEASGSSSFN MPLNNNNNDN NLRSPVSPRP  300
FLSMYLSSAA RNNNRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239824.10.0PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A1J6J9250.0A0A1J6J925_NICAT; Transcription factor myb1r1
STRINGXP_009784767.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.15e-37MYB family protein