PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02807g11019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 434aa    MW: 47735.3 Da    PI: 5.2955
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02807g11019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.53.5e-112734313374
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                                lLl+cAe+v+ ++l  a +lL ++ el+sp g++ +R+aayf+eAL+ar+ +s  + y+ l+ ++ + ++s++ ++al+ ++ +
  Niben101Scf02807g11019.1  73 GLLLQCAECVAMENLDDAGNLLPEIAELSSPFGSSAERVAAYFAEALSARIISSRLRFYSPLNLKTLTLTHSQKLFTALQSYNTI 157
                               58*********************************************************************************** PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                               sP++kfsh taNqaI++a+eg ++vH+iD+di+qGlQWp L+q L+sR+++  s++iTgvgs    s e le+tg+rLa+fA+++
  Niben101Scf02807g11019.1 158 SPLIKFSHYTANQAIYQALEGGDHVHVIDLDIMQGLQWPGLFQILSSRSRKLRSVKITGVGS----SMELLESTGRRLAEFANSF 238
                               **************************************************************....******************* PP

                      GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                               g+pfef++l  k  +  + ++L vk gE+++Vn+++  h l+d ++s       + +l++ l+Pk++++veq+++h +++Fl rf
  Niben101Scf02807g11019.1 239 GLPFEFKPLEGKFGNIADRSQLGVKMGETIVVNWMH--HCLYDITGSDLG----TFRLLNLLRPKLITIVEQDLSH-AGNFLGRF 316
                               ********977777888******************9..777766777777....999999****************.899***** PP

                      GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                               +eal+yysalfdsl  +l+ es er++vE++l+g ei+n+va  g +r+ +   +e+W + l++ GF pv+ls + a+qa+lll 
  Niben101Scf02807g11019.1 317 VEALHYYSALFDSLGDGLSVESVERHTVEQQLFGCEIRNIVAVGGPKRTGEVP-VERWGDELKRNGFLPVSLSGTPAAQASLLLG 400
                               ***********************************************887765.9****************************** PP

                      GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +++ +gy++ ee+g+l lgWkd +L+++SaW+
  Niben101Scf02807g11019.1 401 MFP-KGYTLVEENGCLKLGWKDLSLLTASAWQ 431
                               ***.9**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.5845412IPR005202Transcription factor GRAS
PfamPF035141.2E-10973431IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MLHSLQFSVS ASASNSSSSM SSKRSIADFT PVLSDEDALH LSKRPRSNEE EQFEEGEDQL  60
PVDTDSVGLR LLGLLLQCAE CVAMENLDDA GNLLPEIAEL SSPFGSSAER VAAYFAEALS  120
ARIISSRLRF YSPLNLKTLT LTHSQKLFTA LQSYNTISPL IKFSHYTANQ AIYQALEGGD  180
HVHVIDLDIM QGLQWPGLFQ ILSSRSRKLR SVKITGVGSS MELLESTGRR LAEFANSFGL  240
PFEFKPLEGK FGNIADRSQL GVKMGETIVV NWMHHCLYDI TGSDLGTFRL LNLLRPKLIT  300
IVEQDLSHAG NFLGRFVEAL HYYSALFDSL GDGLSVESVE RHTVEQQLFG CEIRNIVAVG  360
GPKRTGEVPV ERWGDELKRN GFLPVSLSGT PAAQASLLLG MFPKGYTLVE ENGCLKLGWK  420
DLSLLTASAW QPCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1556543212379Protein SCARECROW
5b3h_D1e-1556543212379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235805.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-167SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1J6L0K60.0A0A1J6L0K6_NICAT; Scarecrow-like protein 23
STRINGXP_009804953.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-158GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]