PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02795g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 347aa MW: 38869.1 Da PI: 4.7833

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02795g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.7	2.1e-11	17	69	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 rW t+E++ll++av+++G+++W+++a +++ +++ +c+++++++ Niben101Scf02795g00003.1 17 PRWGTWEELLLACAVNRYGTKSWDSVAVELQkrstapaWLLSPHNCRLKYLDL 69 59*****************************9999998558999999999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	8.3E-5	15	72	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.06E-5	17	75	IPR009057	Homeodomain-like
CDD	cd00167	2.48E-5	18	70	No hit	No description
Pfam	PF00249	2.9E-11	18	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MAKPDATVEN SSEEEEPRWG TWEELLLACA VNRYGTKSWD SVAVELQKRS TAPAWLLSPH 60 NCRLKYLDLK RRYSNKCNGN GNVNDDDEDK EKTVCVPLLE ELRKLRVAEL RREVERYDLS 120 IVSLQLKKQR LEEERERSMQ HTKNGESKSD LATNERRGAN NEKIEETEIG IKPEDKSSPE 180 VVAADEASEE ASDKNQQSVN ESSSTDPKHS CSLKSSAEEN EDKTEPVRAG SVKTEPLQTG 240 GIKEEPDKCA EERPVREDSC NGSSDSVKKP PIGVTMKIEP VSESAELVES MAESKGGEER 300 TKENSDVQSS VRKKVDDIVS AGVAAEMNVR RRMDLPPLKK YPLNLSH

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MAKPDATVEN SSEEEEPRWG TWEELLLACA VNRYGTKSWD SVAVELQKRS TAPAWLLSPH  60
NCRLKYLDLK RRYSNKCNGN GNVNDDDEDK EKTVCVPLLE ELRKLRVAEL RREVERYDLS  120
IVSLQLKKQR LEEERERSMQ HTKNGESKSD LATNERRGAN NEKIEETEIG IKPEDKSSPE  180
VVAADEASEE ASDKNQQSVN ESSSTDPKHS CSLKSSAEEN EDKTEPVRAG SVKTEPLQTG  240
GIKEEPDKCA EERPVREDSC NGSSDSVKKP PIGVTMKIEP VSESAELVES MAESKGGEER  300
TKENSDVQSS VRKKVDDIVS AGVAAEMNVR RRMDLPPLKK YPLNLSH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760270.1	0.0	PREDICTED: uncharacterized protein LOC104212640
Refseq	XP_016463328.1	0.0	PREDICTED: uncharacterized protein LOC107786375
TrEMBL	A0A1S3ZFU7	0.0	A0A1S3ZFU7_TOBAC; uncharacterized protein LOC107786375
TrEMBL	A0A1U7VEL2	0.0	A0A1U7VEL2_NICSY; uncharacterized protein LOC104212640
STRING	XP_009760270.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4268	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	9e-13	DNA-binding bromodomain-containing protein