PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02793g13016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 333aa    MW: 37026 Da    PI: 7.2691
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02793g13016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-17176230256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Niben101Scf02793g13016.1 176 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKHLKLRPRQVEVWFQNRRARTK 230
                               788899***********************************************98 PP
2HD-ZIP_I/II123.11.3e-39176265191
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lk ++++l+een+rL+ke +
  Niben101Scf02793g13016.1 176 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKHLKLRPRQVEVWFQNRRARTKLKQTELDCEYLKMCFETLTEENRRLQKELQ 260
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreel 91 
                               eLr +l
  Niben101Scf02793g13016.1 261 ELR-AL 265
                               **9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-17159233IPR009057Homeodomain-like
SuperFamilySSF466891.45E-17167233IPR009057Homeodomain-like
PROSITE profilePS5007116.39172232IPR001356Homeobox domain
SMARTSM003898.8E-14174236IPR001356Homeobox domain
CDDcd000861.09E-14176233No hitNo description
PfamPF000463.6E-15176230IPR001356Homeobox domain
PROSITE patternPS000270207230IPR017970Homeobox, conserved site
PfamPF021831.8E-9232266IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.5E-23232275IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MELALSLGGD TQKPFSFLEK STHNSSSHEE MLMGSNKDLS FCMGLGKSNN THEDENNGGR  60
KILHLDLLPL SAVPLNQIMP SEIPFPWLSQ NIAAEPGLTN APAGTVLDMN RRPIVVAEKD  120
EEGADLLSPN SNSAVSSFQM EFSSIYRNGI SRSLIGKRDH FERGVSDEDE NNGLARKKLR  180
LTKEQSAFLE ESFKEHNTLN PKQKLALAKH LKLRPRQVEV WFQNRRARTK LKQTELDCEY  240
LKMCFETLTE ENRRLQKELQ ELRALKFSQP SYMQLPATTL TMCPSCERVA TTTATADAAV  300
AAAAAATNTT LSLAKTNLFP FPHAQVHAPQ AAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224232RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766178.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X2
RefseqXP_016464966.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
SwissprotP466655e-82HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3ZKR30.0A0A1S3ZKR3_TOBAC; homeobox-leucine zipper protein HOX11-like isoform X1
TrEMBLA0A1U7VIL10.0A0A1U7VIL1_NICSY; homeobox-leucine zipper protein HOX11-like isoform X2
STRINGXP_009766177.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-72homeobox from Arabidopsis thaliana