PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02775g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 25088 Da PI: 7.7071 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 119 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp +ng +r++lg++ tae+Aa a+++a+ +++g Niben101Scf02775g00003.1 119 HYRGVRVRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAAFAYDKAAFRMRG 169 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-31 | 118 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.10E-29 | 118 | 177 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-23 | 119 | 179 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.9E-37 | 119 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.683 | 119 | 177 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-12 | 119 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-10 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-10 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MYGNDYALLE SIKCHLLDDW DTTPVTTSDN STTSTYSRNN SIESIEFDYT AHTFLHDIIN 60 EGIGYGFDPT ILNIKLEPEI SVQSPEVWNF TNFTEFVAPP ETAAPLVTRT VAAPPKAKHY 120 RGVRVRPWGK FAAEIRDPAK NGARVWLGTY ETAEDAAFAY DKAAFRMRGS RALLNFPLRI 180 NSGEPDPIRV GSKRLSTSPE HSSSSPKKRK QNGSGRYTQL GANQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-40 | 116 | 184 | 2 | 70 | ATERF1 |
3gcc_A | 1e-40 | 116 | 184 | 2 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234988.1 | 1e-140 | PREDICTED: ethylene-responsive transcription factor 1A-like | ||||
Swissprot | O80337 | 3e-54 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
Swissprot | O80338 | 2e-54 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A1J6KXK7 | 1e-139 | A0A1J6KXK7_NICAT; Ethylene-responsive transcription factor 1a | ||||
STRING | XP_009796413.1 | 1e-124 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 5e-43 | ethylene responsive element binding factor 2 |
Publications ? help Back to Top | |||
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