PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02774g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 270aa    MW: 30672.8 Da    PI: 6.2362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02774g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.7e-151461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd++l++ +   G  +W++ +r  g+ R++k+c++rw +yl
  Niben101Scf02774g01002.1 14 KGPWSAEEDKKLINFILINGQCCWRSLPRLAGLLRCGKSCRLRWTNYL 61
                              79******************************99************97 PP
2Myb_DNA-binding24.56.4e-0876972547
                              HHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding 25 ktIartmgkgRtlkqcksrwqky 47
                              k Ia++++ gRt++++k++w+++
  Niben101Scf02774g01002.1 76 KMIASHLP-GRTDNEIKNHWNTH 97
                              67******.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-20569IPR009057Homeodomain-like
PROSITE profilePS5129418.97965IPR017930Myb domain
SMARTSM007173.0E-111363IPR001005SANT/Myb domain
PfamPF002498.6E-131461IPR001005SANT/Myb domain
SuperFamilySSF466894.3E-211499IPR009057Homeodomain-like
CDDcd001671.88E-81661No hitNo description
SMARTSM007172966100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-1177113IPR009057Homeodomain-like
PROSITE profilePS500904.8797898IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRKPCCDKA GVKKGPWSAE EDKKLINFIL INGQCCWRSL PRLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEYEEKMIAS HLPGRTDNEI KNHWNTHIKK KLKKMGIDPI THQPITADQP  120
NIEQPTKNQP IIQQEKQTTM PISPAHVVPE IIDILDHNKE LVETPILSTI TDGILEDGGH  180
NNSNNNNNKN MGTSFCTDEV PVIKPHEILF HSESTTSTSS SSSPTSIILE DMQFDFNWAD  240
DFSRTLDYLL NDDIDMNNVI SQDWSKVLEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-17141027108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620990.11e-166PREDICTED: protein ODORANT1-like
TrEMBLA0A1S4DQ141e-164A0A1S4DQ14_TOBAC; protein ODORANT1-like
STRINGXP_009620990.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.13e-74myb domain protein 20