PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02771g03017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 116aa MW: 12766.4 Da PI: 9.0234 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 72 | 8.6e-23 | 78 | 116 | 2 | 40 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryW 40 +e+alkcprC+s+ntkfCy+nnyslsqPr+fCk+Crry+ Niben101Scf02771g03017.1 78 PETALKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYY 116 57789*********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-24 | 62 | 116 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.7E-19 | 80 | 116 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 20.793 | 82 | 116 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MVFSSIPAYL DPANWQQQSG GSIPNHHQLT SPPSQTATPP PLPPPPPPLQ PHDSTGGAGS 60 IRPGSMADRA RLANIPMPET ALKCPRCESS NTKFCYFNNY SLSQPRHFCK TCRRYY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:17583520, ECO:0000269|PubMed:30626969}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269|PubMed:30626969}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019250522.1 | 3e-65 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
Swissprot | O80928 | 2e-35 | DOF24_ARATH; Dof zinc finger protein DOF2.4 | ||||
TrEMBL | A0A1J6J1N7 | 6e-64 | A0A1J6J1N7_NICAT; Dof zinc finger protein dof2.4 | ||||
STRING | XP_009758525.1 | 2e-64 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1917 | 24 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 7e-35 | DNA binding with one finger 2.4 |
Publications ? help Back to Top | |||
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