PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf02759g01004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 349aa MW: 38630.9 Da PI: 8.6569 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.9 | 2e-24 | 87 | 131 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Niben101Scf02759g01004.1 87 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 131 79****************************************986 PP | |||||||
2 | QLQ | 64 | 3.7e-22 | 27 | 62 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++ Niben101Scf02759g01004.1 27 PFTALQWQELEHQAMIYKYLVAGMPVPPDLVVPIRR 62 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-12 | 26 | 62 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.1E-17 | 27 | 61 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.204 | 27 | 62 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.831 | 87 | 131 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.4E-21 | 88 | 130 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MSGTSTSLGI GVGGGGGVGY DYGFRPPFTA LQWQELEHQA MIYKYLVAGM PVPPDLVVPI 60 RRSFDATSAR FFNHPMSYCS YYGKKFDPEP GRCRRTDGKK WRCSKDAHPD SKYCERHMHR 120 GRNRSRKPVE SQSTSQSLST TISHITTGSS NRTGSFLSNS SGSFQNMPLY SVATSDGLSY 180 GSTATKLQME PVSYGINNME YRYLHGMAPD ADDSSEVSAS VRSLGMGSNT DNMRRLMPSQ 240 VPSKPTVNPK NDSQLLGSSP HSFEPVIDAT IAKQQPQHCF FGNDIGSRVK QEPHPMRSFF 300 DEWPTSKESW SNLDEEYGKN NFSTTQLSIS IPNAHSGFSS TSTRSINEM |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences (PubMed:24532604). Transcription activator that plays a regulatory role in grain development (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates grain size by promoting cell division and expansion, leading to increased grain length and width (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates the expression of genes promoting cell proliferation (PubMed:26187814, PubMed:26936408). Activates the expression of expansin genes to promote cell expansion and grain size (PubMed:27250747). May promote grain size by activating brassinosteroid responses (PubMed:27250747). Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (Probable). Component of the miRNA396c-GRF4-GIF1 regulatory module that plays an important role in grain size determination (Probable) (PubMed:27250747, PubMed:27250749, PubMed:27107174). {ECO:0000269|PubMed:24532604, ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747, ECO:0000269|PubMed:27250749, ECO:0000305|PubMed:26187814, ECO:0000305|PubMed:27107174, ECO:0000305|PubMed:27250747, ECO:0000305|PubMed:27250749}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: The microRNA396c negatively regulates GRF4 at the transcriptional level. {ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019254185.1 | 0.0 | PREDICTED: growth-regulating factor 4-like | ||||
Refseq | XP_019254186.1 | 0.0 | PREDICTED: growth-regulating factor 4-like | ||||
Refseq | XP_019254187.1 | 0.0 | PREDICTED: growth-regulating factor 4-like | ||||
Swissprot | Q6ZIK5 | 4e-79 | GRF4_ORYSJ; Growth-regulating factor 4 | ||||
TrEMBL | A0A1J6IIE4 | 0.0 | A0A1J6IIE4_NICAT; Growth-regulating factor 4 (Fragment) | ||||
STRING | XP_009606791.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-45 | growth-regulating factor 5 |