PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02749g05039.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 543aa    MW: 60214.3 Da    PI: 5.8689
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02749g05039.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.76e-13231287155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++t+e+Aa+a++ a++k++g
  Niben101Scf02749g05039.1 231 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDTEEKAARAYDLAALKYWG 287
                               78*******************333.44555535555.77******************98 PP
2AP246.58.8e-15332381355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Niben101Scf02749g05039.1 332 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 381
                               9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.87E-19231295No hitNo description
PfamPF008473.4E-10231287IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-15231297IPR016177DNA-binding domain
SMARTSM003801.2E-22232301IPR001471AP2/ERF domain
PROSITE profilePS5103218.083232295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-13232296IPR001471AP2/ERF domain
PRINTSPR003671.2E-6233244IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18330391IPR016177DNA-binding domain
CDDcd000184.36E-25330391No hitNo description
SMARTSM003802.1E-34331395IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18331389IPR001471AP2/ERF domain
PROSITE profilePS5103219.137331389IPR001471AP2/ERF domain
PfamPF008471.7E-9332381IPR001471AP2/ERF domain
PRINTSPR003671.2E-6371391IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSTWLGFSLS ADFNIGDDDD EEEQVIVKDY QSRNENQAAG NDANSVEETP LSVMPSHYSF  60
PRCDTTTEDC WRYENHGMNS TTNPNEEGPK LEDFLGCCYS NFPPDHEQKI AEINVNIPPT  120
INPSDHEQQF QVMVPNGQFQ SSNEFSNSTT GSVYYLPFDG ATSVSGFKSW LRQSAAAAPL  180
ISSAEENSSN NCQTLSLAAA PKKRPVAVKN ITGSREPVPR KSIDTFGQRT SQYRGVTRHR  240
WTGRYEAHLW DNSCRKEGQT RKGRQGGYDT EEKAARAYDL AALKYWGPTT YINFPLNTYE  300
KELEEMKNMN RQEFVAHLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  360
TFSTQEEAAE AYDIAAIKFR GTSAVTNFDI SRYDVKRICS SSTLIAGDLA KRSPSKDSGV  420
CPSSFEDYNN SCTSSPQRIL AITNGEQLQQ SADNSFMDMV PLIAAGSNSR DLSSALSPKC  480
SCSASGSGFG SGSGSTKMSC EFGVGLEYPQ LEDGRKRNDE NPQSLGRNMD LVPPVPMFAL  540
WNQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231310.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-133AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A314KHG90.0A0A314KHG9_NICAT; Ap2-like ethylene-responsive transcription factor ail1
STRINGXP_009763770.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-128AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]