PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02744g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 157aa MW: 17431.4 Da PI: 7.8432 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 6e-20 | 16 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +g+WvAe+r p++ r r++lg+++taeeAa+a++aa +l+g Niben101Scf02744g00004.1 16 RYKGVRMRK-WGKWVAEVRQPKS---RDRIWLGSYDTAEEAARAYDAAVVCLRG 65 69*****99.*******999854...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.35E-32 | 16 | 75 | No hit | No description |
PROSITE profile | PS51032 | 23.288 | 16 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-31 | 16 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-36 | 16 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 16 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 16 | 74 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.8E-10 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MVRPKGNQEK KDNGDRYKGV RMRKWGKWVA EVRQPKSRDR IWLGSYDTAE EAARAYDAAV 60 VCLRGPSATI NFPNNPPLIP SSGPNCDQQQ LSPSQIQVAA SRHARRICES AVGTVFFKDN 120 NNSEFGCSYV DCYNLATTDK TSTGDGEVLH DDLFDSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-18 | 16 | 74 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791847.1 | 1e-106 | PREDICTED: ethylene-responsive transcription factor ERF016-like | ||||
Refseq | XP_016514523.1 | 1e-106 | PREDICTED: ethylene-responsive transcription factor ERF016-like | ||||
Swissprot | Q9C591 | 4e-35 | ERF16_ARATH; Ethylene-responsive transcription factor ERF016 | ||||
TrEMBL | A0A1S4DM94 | 1e-105 | A0A1S4DM94_TOBAC; ethylene-responsive transcription factor ERF016-like | ||||
TrEMBL | A0A1U7XIG9 | 1e-105 | A0A1U7XIG9_NICSY; ethylene-responsive transcription factor ERF016-like | ||||
STRING | XP_009791847.1 | 1e-105 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 1e-27 | ERF family protein |