PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02726g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 478aa    MW: 53801.6 Da    PI: 5.1605
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02726g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.8e-15130169245
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 
                               +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa +
  Niben101Scf02726g03006.1 130 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAML 169
                               89*******.**********82....35**************976 PP
2AP2612.7e-19231280255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Niben101Scf02726g03006.1 231 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 280
                               89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-19129168IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-14130176IPR016177DNA-binding domain
PROSITE profilePS5103217.464130170IPR001471AP2/ERF domain
PfamPF008479.3E-10130169IPR001471AP2/ERF domain
CDDcd000183.17E-21130168No hitNo description
SMARTSM003803.7E-15130180IPR001471AP2/ERF domain
PRINTSPR003676.5E-10131142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-29230287IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-21231287IPR016177DNA-binding domain
PROSITE profilePS5103223.657231288IPR001471AP2/ERF domain
PfamPF008471.4E-12231280IPR001471AP2/ERF domain
SMARTSM003805.3E-38231296IPR001471AP2/ERF domain
CDDcd000181.76E-32231287No hitNo description
PRINTSPR003676.5E-10254270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDHSMLCPIK YTEHKKTIRK VTKPSFIKPK KVTEARKSSD YNPTIPRTVR ISVTDPDATD  60
SSSDEEELFG RKRVKRYINE ISIETSPIND VKPLNSGKAI KKRAAEASIP KQKALKVKVV  120
QPPPDGTVRK FRGVRQRPWG KWAAEIRDPA RRVRLWLGTY DTAEEAAMLF GRKRVKRYIN  180
EISIETSPIN DVKPLNSGKA IKKRAAEASI PKQKALKVKV VQPPPDGTVR KFRGVRQRPW  240
GKWAAEIRDP ARRVRLWLGT YDTAEEAAMV YDNAAIKLRG PDALTNFITP PTKPEEVNVA  300
SNSGYESGDE SHNLSSPTSV LRFRTSQSSE EAEQQSGSEP ILEETKGDVS CPLVEEEAVL  360
DSMDNSEQTV EPLECQGETS MIIPDYSNDY LPTDVPFLDD FFNFEAAEQT LLDDTTSFAN  420
DLCTSYDDVS SWDFANDLLL DHEIIKFEDS FQDLSALEVD NYFRDIGDFS SVDALMAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19230287159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19230287462ATERF1
3gcc_A1e-19230287462ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791967.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
RefseqXP_019257133.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A1J6HUP80.0A0A1J6HUP8_NICAT; Ethylene-responsive transcription factor crf4
TrEMBLA0A1U7XIT50.0A0A1U7XIT5_NICSY; ethylene-responsive transcription factor CRF4-like
STRINGXP_009791967.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-47cytokinin response factor 4