PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf02720g08001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 392aa MW: 43003.8 Da PI: 6.7777 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 46 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Niben101Scf02720g08001.1 46 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 95 69*******.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.7E-11 | 46 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 46 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-34 | 46 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.089 | 46 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-21 | 46 | 103 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.62E-30 | 46 | 102 | No hit | No description |
PRINTS | PR00367 | 2.3E-9 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 392 aa Download sequence Send to blast |
MEDAMRRLNQ ESDIPLQTTI CTTKRSCGAN KRSLKDGGGS SVGAVRYRGV RRRPWGRYAA 60 EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGVKART NFVYPSSPAQ PTSTNDGLTF 120 LNIPNSFNYT CAKSFPYQAA LKDLSNRQFF HSNYSPSYGS GIRGVNGTTV ATATQKSNDS 180 LNMLLFRELL SPNSSDTTTT SLSPDTGFNS MPLYEQLPLM FSRNNTSISL NSSSSNLINH 240 TSSSSTFLPT TNNAIIPSSS VMTLPKIENV HSINNSTTCI HDDSGMDFFP SEPSDSGLLE 300 EALNGFFPKP KPIKSEPFPS STKGELSEVS NIPQQINDGL NSGFEFSHTS SFPMYHQDFA 360 ANLQMSSGDN MMGDIFQYPD LLNIFAAKLQ NS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-21 | 36 | 102 | 2 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019264879.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A314L359 | 0.0 | A0A314L359_NICAT; Uncharacterized protein | ||||
STRING | XP_009765569.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G24590.1 | 4e-13 | DORNROSCHEN-like |