PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02702g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 451aa MW: 49698.2 Da PI: 7.616

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02702g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.5	3.9e-09	169	195	1	32
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfs 32 s+y+GV++++++grW+++I+d k+f+ Niben101Scf02702g00005.1 169 SQYRGVTFYRRTGRWESHIWDcG------KQFR 195 78*******************33......5553 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	7.8E-5	170	210	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.33E-5	239	283	IPR016177	DNA-binding domain
CDD	cd00018	1.80E-11	239	282	No hit	No description
SMART	SM00380	4.1E-9	240	288	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MYFVKGEMLD LNVSAVSVNS NCDETDPNNN TTLFFKDEYS AGTSNTTASS SVVNAPVAGD 60 EDSNSSSVHH GSKWAHHSLS TLNFSILKSD RAIDTEDDMS TDDVLTRQLF PVKNESQGQG 120 TRIQGQSQCW LNLSVPESGG GAEMGIYKPP TPAQQPVKKS RRGPRSRSSQ YRGVTFYRRT 180 GRWESHIWDC GKQFRGVDAD INFNITDYEE DMEQMKNLSK EEFVQVLRRQ STGFSRGNSK 240 YRGVTLHKCG RWEARVGQFL GKKAYDKAAI KCNGREAVTS FEPNTYERDM KEDNKDGSGQ 300 NLDLNLWISP PLAGPKRDEI GRNVPFNFGA HEMVIGRRLE VENSSTAPQG APTASKLSVL 360 TGVYPGFSPH NMEGAMAKVE ATSSPGFPNW AWKIHSQGLI TPVPVFSSSA ASSGFSTTTT 420 LYPSTLLLPS NQLRLPTNST FQHPPVTLNI S

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MYFVKGEMLD LNVSAVSVNS NCDETDPNNN TTLFFKDEYS AGTSNTTASS SVVNAPVAGD  60
EDSNSSSVHH GSKWAHHSLS TLNFSILKSD RAIDTEDDMS TDDVLTRQLF PVKNESQGQG  120
TRIQGQSQCW LNLSVPESGG GAEMGIYKPP TPAQQPVKKS RRGPRSRSSQ YRGVTFYRRT  180
GRWESHIWDC GKQFRGVDAD INFNITDYEE DMEQMKNLSK EEFVQVLRRQ STGFSRGNSK  240
YRGVTLHKCG RWEARVGQFL GKKAYDKAAI KCNGREAVTS FEPNTYERDM KEDNKDGSGQ  300
NLDLNLWISP PLAGPKRDEI GRNVPFNFGA HEMVIGRRLE VENSSTAPQG APTASKLSVL  360
TGVYPGFSPH NMEGAMAKVE ATSSPGFPNW AWKIHSQGLI TPVPVFSSSA ASSGFSTTTT  420
LYPSTLLLPS NQLRLPTNST FQHPPVTLNI S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016475255.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
TrEMBL	A0A1S4AEY8	0.0	A0A1S4AEY8_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRING	XP_009772737.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA591	24	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.2	2e-76	related to AP2.7