PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02700g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 300aa    MW: 31819.9 Da    PI: 9.7185
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02700g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.2e-10104129227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               kt+lC+ f     Ck+Gd+C+FaHg+
  Niben101Scf02700g00006.1 104 KTRLCNKFNTAEGCKFGDKCNFAHGE 129
                               8***********************96 PP
2zf-CCCH33.28.7e-11267291126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt++C +fa+ G C +G+rC+FaHg
  Niben101Scf02700g00006.1 267 FKTKNCENFAK-GSCTFGERCHFAHG 291
                               69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.6763765IPR000571Zinc finger, CCCH-type
SMARTSM003562.43764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-53864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
Gene3DG3DSA:4.10.1000.102.7E-14100134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-8101133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882102130IPR000571Zinc finger, CCCH-type
SMARTSM003560.001102129IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-7104129IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.8E-14168248IPR004088K Homology domain, type 1
SMARTSM003225.5E-11175245IPR004087K Homology domain
PROSITE profilePS5008414.257176240IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.7E-14176246IPR004088K Homology domain, type 1
CDDcd001054.13E-13178240No hitNo description
PfamPF000131.4E-8178242IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.1E-14264296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8265296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713266293IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6266292IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8267291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEFGGDRKRG RPHGPMNGNG TLKKSKQELE SIPTGIGSKL KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGLKA VTQMLGSNPA LPAASRNSIA PMSFPDGSSP PAVKTRLCNK FNTAEGCKFG  120
DKCNFAHGEW ELGKPMAPLY EESRGMFQTH GTHGRYGSRP ETTPAGFGAA ASFGSSATAK  180
ISVDASLAGP IIGKGGVNSK QISRLTGAKF SIRDHESDSN LRNIELEGTI DQIGQASQMV  240
RELIQSVTAK SAAPLMKNPS STATSNFKTK NCENFAKGSC TFGERCHFAH GAEELRRSGP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803026.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016471702.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-109C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S4A4V50.0A0A1S4A4V5_TOBAC; zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A1U7YM220.0A0A1U7YM22_NICSY; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009803026.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-50C3H family protein