PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02669g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 696aa MW: 76980.5 Da PI: 7.5601 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75 | 8.7e-24 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD Niben101Scf02669g00003.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGD 205 89****************************986445444..8999**************************************** PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 ++vF + +++ l+v+++r+ Niben101Scf02669g00003.1 206 SIVFL--RAENGDLCVGIRRA 224 *****..4488999****997 PP | |||||||
2 | Auxin_resp | 113.9 | 1.5e-37 | 291 | 374 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++FevvY+Prast+eFvvk++ v++a++v++s GmRfkm fetedss++++ +Gt+++v+ dp++WpnS+Wr+L+ Niben101Scf02669g00003.1 291 AAKLAACGQPFEVVYYPRASTPEFVVKASAVRAAMRVQWSSGMRFKMPFETEDSSRISWfMGTISSVHVEDPIHWPNSPWRLLQ 374 6889999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-38 | 114 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.09E-29 | 116 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.99E-22 | 122 | 223 | No hit | No description |
PROSITE profile | PS50863 | 13.239 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-22 | 123 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-23 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-32 | 291 | 374 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.579 | 610 | 690 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MINIMNPVNK PMNEVEKGLD PQLWHACAGG MIQMLPLNSK AFYFPQGHAE HAHKNVDFGG 60 FPKIPPLTLC RVSSIRYLAD TETDEVYAKI RLVPLKGNEC DVEDDAGFLG LDKNENQEKP 120 NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG EVWKFRHIYR 180 GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RAENGDLCVG IRRAKRGIGS GPEVNSGWNT 240 GPGNYASSLY HGFPGFLSED EKKFIRNGQA AKSDDGIRGK GKVRADSVIE AAKLAACGQP 300 FEVVYYPRAS TPEFVVKASA VRAAMRVQWS SGMRFKMPFE TEDSSRISWF MGTISSVHVE 360 DPIHWPNSPW RLLQVHWDEP DLLQNVKRVS PWLVELVSNM PPIHLSPFSP PRKKLRLPQP 420 PEFPMVGQLS MSSLLNNPLS PSSPLCCISD NIPAGIQGAR HAQCGLSSSD LHVNKLQAGL 480 LPFGFKELER SVPPSRLLKG GSFMTSFDND ENISCLLTMG NTSPTSTKRK ETQTPTFMLF 540 GKPILTEQQM SLSCSSETVG NSSSNGNPEK MMNLSEGSGS AVIHNGPPEN SSGDVLPWYK 600 NQKLEFRMET GHCKVFMESE DVGRTLDLSV LSSYEELYKK LADMFGVGTS EMLSNVLYQD 660 LTGAVKHTGD EPFSQFVKTA RRLTILTDSG SDNIRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-74 | 19 | 395 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019235544.1 | 0.0 | PREDICTED: auxin response factor 16-like isoform X1 | ||||
Refseq | XP_019235545.1 | 0.0 | PREDICTED: auxin response factor 16-like isoform X1 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1J6K8F5 | 0.0 | A0A1J6K8F5_NICAT; Auxin response factor | ||||
STRING | XP_009784518.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA592 | 24 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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