PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02665g09005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 428aa MW: 48635.4 Da PI: 5.7642 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.8 | 2.8e-19 | 137 | 183 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv++vkq+G+++W+ Ia+ m gR +kqc++rw+++l Niben101Scf02665g09005.1 137 KGQWTEEEDRKLVKLVKQFGMRRWAQIAENMV-GRAGKQCRERWHNHL 183 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 56.4 | 6.6e-18 | 189 | 231 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eE++ lv+a+kq G++ W+ Ia++++ gRt++ +k++w+ Niben101Scf02665g09005.1 189 KDTWSEEEELMLVEAHKQIGNK-WAEIAKRIP-GRTENAIKNHWN 231 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.145 | 132 | 187 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.46E-30 | 136 | 230 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-17 | 136 | 185 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-27 | 138 | 191 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.2E-19 | 140 | 199 | No hit | No description |
CDD | cd00167 | 2.24E-16 | 140 | 183 | No hit | No description |
PROSITE profile | PS51294 | 19.858 | 188 | 238 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 188 | 236 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-12 | 191 | 234 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 192 | 236 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MEGGGGDGSA YQPFQNVPNN LPIFQQGPPL TAINRFLWSN QSQFSYQQNE SVFPHQRGGF 60 YDFSSYRDSA SGSSSHEKVF SWTSFPEPGI FFNEQNSVGW NNQENGIADE MISSEKNSKE 120 TGKKAKEGAS STTVVVKGQW TEEEDRKLVK LVKQFGMRRW AQIAENMVGR AGKQCRERWH 180 NHLRPDIKKD TWSEEEELML VEAHKQIGNK WAEIAKRIPG RTENAIKNHW NATKRRQNSR 240 RNKLKKQEKD GPNESKYRSN ILQDYIRSKY FSDDSPLTTT MTPMTNATPP YSNDDSPSLL 300 TSQTYDEEMN FMQNLFGRNS LMENNGKVLD NNSSSNSYGF NSFGFNYSKN DNQTDNGQDG 360 CNLYLEPNMY MADQSYNCSD LYLSYLLDRT STSAATSLPY SGSFAYGNMM NQGSSSSGAN 420 NEVDLMEM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-44 | 134 | 237 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-44 | 134 | 237 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619843.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | A0A1J6IRQ3 | 0.0 | A0A1J6IRQ3_NICAT; Transcription factor myb98 | ||||
STRING | XP_009619843.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4825 | 19 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 4e-69 | myb domain protein 119 |