PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02665g09005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 428aa    MW: 48635.4 Da    PI: 5.7642
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02665g09005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.82.8e-19137183148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT+eEd +lv++vkq+G+++W+ Ia+ m  gR +kqc++rw+++l
  Niben101Scf02665g09005.1 137 KGQWTEEEDRKLVKLVKQFGMRRWAQIAENMV-GRAGKQCRERWHNHL 183
                               799*****************************.*************97 PP

2Myb_DNA-binding56.46.6e-18189231145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               ++ W++eE++ lv+a+kq G++ W+ Ia++++ gRt++ +k++w+
  Niben101Scf02665g09005.1 189 KDTWSEEEELMLVEAHKQIGNK-WAEIAKRIP-GRTENAIKNHWN 231
                               679*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.145132187IPR017930Myb domain
SuperFamilySSF466892.46E-30136230IPR009057Homeodomain-like
SMARTSM007171.7E-17136185IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-27138191IPR009057Homeodomain-like
PfamPF139213.2E-19140199No hitNo description
CDDcd001672.24E-16140183No hitNo description
PROSITE profilePS5129419.858188238IPR017930Myb domain
SMARTSM007172.2E-16188236IPR001005SANT/Myb domain
CDDcd001671.24E-12191234No hitNo description
Gene3DG3DSA:1.10.10.601.6E-20192236IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEGGGGDGSA YQPFQNVPNN LPIFQQGPPL TAINRFLWSN QSQFSYQQNE SVFPHQRGGF  60
YDFSSYRDSA SGSSSHEKVF SWTSFPEPGI FFNEQNSVGW NNQENGIADE MISSEKNSKE  120
TGKKAKEGAS STTVVVKGQW TEEEDRKLVK LVKQFGMRRW AQIAENMVGR AGKQCRERWH  180
NHLRPDIKKD TWSEEEELML VEAHKQIGNK WAEIAKRIPG RTENAIKNHW NATKRRQNSR  240
RNKLKKQEKD GPNESKYRSN ILQDYIRSKY FSDDSPLTTT MTPMTNATPP YSNDDSPSLL  300
TSQTYDEEMN FMQNLFGRNS LMENNGKVLD NNSSSNSYGF NSFGFNYSKN DNQTDNGQDG  360
CNLYLEPNMY MADQSYNCSD LYLSYLLDRT STSAATSLPY SGSFAYGNMM NQGSSSSGAN  420
NEVDLMEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-441342371104C-Myb DNA-Binding Domain
1msf_C2e-441342371104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619843.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A1J6IRQ30.0A0A1J6IRQ3_NICAT; Transcription factor myb98
STRINGXP_009619843.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.14e-69myb domain protein 119