PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02631g04003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 306aa MW: 34163.3 Da PI: 7.5017

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02631g04003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.2e-13	97	140	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f++L llP++ +K +K++i+ +Av+YIk Lq Niben101Scf02631g04003.1 97 TERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 140 6*******************6....39****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.59E-16	88	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.922	89	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-15	93	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.42E-12	94	144	No hit	No description
SMART	SM00353	2.4E-9	97	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-10	97	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MNEESGRDCL IWENQGWSIL NSNNLDGSEE KFAGDKLSDP NRSNTSHDQS RTAAKETKAA 60 ARGRKRTASG RKESDEAKCG GIGGGEGESD HEIHIWTERE RRKKMRNMFS NLHALLPQLP 120 PKADKSTIVD EAVNYIKTLQ NTLQKLQNQK LEKLHCLTAT MNSNDLSIIT SQKLLESNNR 180 EIFLADQGST SNSTAITPTN NNNNNNTTPF LNIPTVFQTW TSPNVILNVC GEEAHISICC 240 LKKPGILSGI CFVLEKYKIE MISAQVSSDH YRCLYMIQAH VSIHSPSSIY LLSSSFFTQE 300 NNKQTV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019262222.1	1e-179	PREDICTED: transcription factor bHLH95-like
TrEMBL	A0A1J6J3K1	1e-178	A0A1J6J3K1_NICAT; Transcription factor bhlh95
STRING	XP_009627647.1	1e-176	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1324	23	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	3e-39	bHLH family protein