PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02594g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 122aa    MW: 13947.7 Da    PI: 7.6586
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02594g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.6e-09653347
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                               WT++  +++ +a + + ++   +W+  a+ +g g+t++++k ++ k+
  Niben101Scf02594g00002.1  6 TWTPQQNKKFENALAIYDKDtpdRWRNLAKAVGGGKTEEDVKIHYEKL 53
                              7********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.539154IPR017877Myb-like domain
SMARTSM007173.7E-7356IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-12562IPR009057Homeodomain-like
PfamPF002491.6E-6653IPR001005SANT/Myb domain
CDDcd001673.29E-5654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MASNSTWTPQ QNKKFENALA IYDKDTPDRW RNLAKAVGGG KTEEDVKIHY EKLVEDIKRI  60
ESGEVPLPKY NKPNGGHNNK GYTFNDEEQR YIQLAAEVSQ APIEARIGKV KKQMEPIIYV  120
EV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-24275678RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234595.12e-61PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1733e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6KYD44e-60A0A1J6KYD4_NICAT; Protein radialis-like 2
STRINGXP_009586717.14e-60(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.17e-30RAD-like 6