PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02581g01014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 550aa    MW: 61596.5 Da    PI: 6.1256
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02581g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-15494535245
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               + W+ eE++llv+ +kqlG++ W+ Ia+ ++ gRt+++ k++w+
  Niben101Scf02581g01014.1 494 DTWSDEEELLLVETHKQLGNK-WAEIAKIIP-GRTENSMKNHWN 535
                               57*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517355.28E-4036181IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7207.7E-4736227IPR016040NAD(P)-binding domain
PfamPF001064.9E-3138178IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000802.1E-6112123IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7201.6E-60239486IPR016040NAD(P)-binding domain
SuperFamilySSF517358.77E-51241490IPR016040NAD(P)-binding domain
PRINTSPR000818.5E-14241258IPR002347Short-chain dehydrogenase/reductase SDR
CDDcd053241.29E-77241494No hitNo description
PfamPF001064.9E-31241381IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000818.5E-14315326IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000818.5E-14435454IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000802.1E-6435454IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF466894.31E-14483545IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-15487540IPR009057Homeodomain-like
PROSITE profilePS5129417.09488542IPR017930Myb domain
SMARTSM007171.1E-11492540IPR001005SANT/Myb domain
CDDcd001678.02E-10495538No hitNo description
PfamPF002492.0E-13495535IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDKKEKAKER KEKRRQEISL LRTIPYSDHQ RWWSSDTIAV VTGANRGIGF EIAHQLASHG  60
VTVVLTSRET AVGEEAVKVL QEGGLNVSFH QLDIVDLASV QAFCDWIKET YGGLDILINN  120
AGVNFNYGKE NSVEFAETVI QTNYFGTKNM IKALIPLMRP SSAGARIVSV TSRLGRLNSK  180
RNGISNVSVR QQLEDVDTLS EEVIDNTMNK FLEQVKDGTW ESEGWPHVFT DYSLWWSSDT  240
IAVVTGANRG IGFEIAHQLA SHGVTVVLTS RETAVGEEAV KVLQEGGLNV SFHQLDIVDL  300
ASVQAFCDWI KETYGGLDIL INNAGVNFNY GKENSVEFAE TVIQTNYFGT KNMIKALIPL  360
MRPSSAGARI VSVTSRLGRL NSKRNGISNV SVRQQLEDVD TLSEEVIDNT MNKFLEQVKD  420
GTWESEGWPH VFTDYSLSKL AVNAYTRLMA RILEERPEGW VKTAMTGWAG HVSPEEAADT  480
AVWLALLTDQ FVSDTWSDEE ELLLVETHKQ LGNKWAEIAK IIPGRTENSM KNHWNATKRR  540
MNSRRNKKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5o98_A3e-56345019312Alcohol dehydrogenase 1
5o98_B3e-56345019312Alcohol dehydrogenase 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1537548KRRMNSRRNKKR
2543549RRNKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248883.10.0PREDICTED: carbonyl reductase [NADPH] 1-like
TrEMBLA0A1J6J2Z60.0A0A1J6J2Z6_NICAT; (+)-neomenthol dehydrogenase
STRINGXP_009766268.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.16e-18myb domain protein 119