PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02577g03014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 69aa    MW: 7877.05 Da    PI: 10.8033
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02577g03014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-171665155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              s y+G+r  k++g+Wv+eIr+p++   ++r++lg++ t+e Aa+a++ a+++l+g
  Niben101Scf02577g03014.1 16 SVYRGIR--KRNGKWVSEIREPRK---TTRIWLGSYPTPEIAAAAYDVAALALKG 65
                              78****6..779*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-101665IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-151668IPR016177DNA-binding domain
CDDcd000184.95E-131650No hitNo description
PROSITE profilePS5103218.1361769IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-231768IPR001471AP2/ERF domain
SMARTSM003803.0E-171769IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MSRLNYINKS EQGMHSVYRG IRKRNGKWVS EIREPRKTTR IWLGSYPTPE IAAAAYDVAA  60
LALKGPDTR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670746.16e-29PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ391272e-22TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A1U8HXL21e-27A0A1U8HXL2_GOSHI; ethylene-responsive transcription factor ERF025-like
STRINGGorai.006G197200.13e-27(Gossypium raimondii)
STRINGEOY230853e-27(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-22ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]