PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf02577g03014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 69aa MW: 7877.05 Da PI: 10.8033 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.3e-17 | 16 | 65 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+G+r k++g+Wv+eIr+p++ ++r++lg++ t+e Aa+a++ a+++l+g Niben101Scf02577g03014.1 16 SVYRGIR--KRNGKWVSEIREPRK---TTRIWLGSYPTPEIAAAAYDVAALALKG 65 78****6..779*********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.2E-10 | 16 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-15 | 16 | 68 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.95E-13 | 16 | 50 | No hit | No description |
PROSITE profile | PS51032 | 18.136 | 17 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-23 | 17 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-17 | 17 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 69 aa Download sequence Send to blast |
MSRLNYINKS EQGMHSVYRG IRKRNGKWVS EIREPRKTTR IWLGSYPTPE IAAAAYDVAA 60 LALKGPDTR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcriptional activator. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670746.1 | 6e-29 | PREDICTED: ethylene-responsive transcription factor ERF025-like | ||||
Swissprot | Q39127 | 2e-22 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A1U8HXL2 | 1e-27 | A0A1U8HXL2_GOSHI; ethylene-responsive transcription factor ERF025-like | ||||
STRING | Gorai.006G197200.1 | 3e-27 | (Gossypium raimondii) | ||||
STRING | EOY23085 | 3e-27 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-22 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|