PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02563g01008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 191aa MW: 22430.3 Da PI: 6.1541 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.3e-19 | 44 | 97 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ Fe ++++ +e++ +LA++lgL+ qV+vWFqN+Ra++k+ Niben101Scf02563g01008.1 44 KRKLSEEQVNLLEQSFEDEHKLETERKDKLASELGLDPHQVSVWFQNKRARYKN 97 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 110.6 | 1.1e-35 | 43 | 129 | 2 | 88 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kr+ls+eqv+lLE+sFe e+kLe+erK +la+eLgl+p+qv vWFqn+RAR+k+k+lE++y++Lk+++d+ e++rLe+e ++ Niben101Scf02563g01008.1 43 RKRKLSEEQVNLLEQSFEDEHKLETERKDKLASELGLDPHQVSVWFQNKRARYKNKKLEEEYSRLKTEHDTAIVEKCRLENEIQK 127 8***********************************************************************************9 PP HD-ZIP_I/II 87 Lr 88 L Niben101Scf02563g01008.1 128 LL 129 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.876 | 38 | 98 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 41 | 102 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.39E-15 | 43 | 99 | No hit | No description |
SuperFamily | SSF46689 | 3.67E-17 | 43 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.6E-16 | 44 | 97 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 45 | 105 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.6E-5 | 69 | 78 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 73 | 96 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.6E-5 | 78 | 94 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVLISQYYPD IYTQLISEPG EAKRRRRRKK NKGEGSSNSG VMRKRKLSEE QVNLLEQSFE 60 DEHKLETERK DKLASELGLD PHQVSVWFQN KRARYKNKKL EEEYSRLKTE HDTAIVEKCR 120 LENEIQKLLL ERNCDGVSSN SPISTSSLTM DQQPFLGEFG MEGMLMDNLF FVSENTYNYH 180 EGLEWVNPIY I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 27 | KRRRRR |
2 | 23 | 29 | RRRRRKK |
3 | 27 | 45 | RKKNKGEGSSNSGVMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605338.1 | 1e-113 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 1e-58 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A1S4DI66 | 1e-111 | A0A1S4DI66_TOBAC; homeobox-leucine zipper protein ATHB-40-like | ||||
STRING | XP_009605338.1 | 1e-112 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-54 | homeobox protein 40 |
Publications ? help Back to Top | |||
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