PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02558g00030.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 977aa MW: 109236 Da PI: 6.1044

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02558g00030.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.9	4.4e-41	112	189	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hsk++ +lvs+l+qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk qa Niben101Scf02558g00030.1 112 MCQVDDCGVDLSNAKDYHRRHKVCEMHSKSSGALVSNLMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKIQA 189 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.6E-33	107	174	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.872	110	187	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.72E-38	111	192	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.5E-30	113	186	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.49E-7	748	865	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.6E-5	754	871	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.68E-6	755	865	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MEARMGGETQ LFNKSLEWDL NDWKWDGDLF IARPNIPSSN YQFFPLETGN SSSSCSDEVN 60 LGEFEKRSRR RENDENVEYD SASLSLKLGD QGGNPREFGK RTKLNTTSSR AMCQVDDCGV 120 DLSNAKDYHR RHKVCEMHSK SSGALVSNLM QRFCQQCSRF HALEEFDEGK RSCRRRLAGH 180 NKRRRKIQAD SVDNNKTLND VQASANRTNH IEDQDLLCHL LRSLASQGSP YXNHIEDQDL 240 LCHLLRSLAS QGSPYGDNNL SGLLQASSNL LNNRSPSRNS DIVSLVSNGS RRPPIPKEQH 300 FASTLAAQVP QISSDVHAVR LEDVQTESCQ SPGTSFPIQN SSPAYAQARE SSAGRRKLIN 360 FDLNDVYDGS DDSRENLDRS PLPTDRGIGP LECRSWLQQD SQQSSPPSRN SDSASTQSPS 420 SSSSDAQSRT DRIVFKLFGK DPSDFPYVLR AQILDWLSHS PSEIESYIRP GCIVLTIYLR 480 LPESAWEELC CDLSSTLSRL LDVPGDSFWT KGWIYIRMQN QIAFVHDGKL LLDVPLPFET 540 IEHTSILSVK PIAVPVSDRA QFIVKGYNLT KPSTRLLCAL EGSYLVTEAN DEVEHVDGVK 600 KNVELQSINL TCSIPAVSGR GFIEVEDHGL SNGFFPIIIA AEDVCSEIRM LESAIELTTA 660 DYVNGLTNNV EVKSQAMDFI HEMGWLLHRN NLKARLGNSN AVLFPLKRFK WLMEFSIDHD 720 WCAVVRKLLN LLLDGTVGGE ENSFLKVSLS EMGLLHKAVR RNSRPLVELL LTYTPAKVAD 780 ELCSEYQSLL GVKGRFLFRP DSVGPAGLTP LHVAAGIDGY EDVLDSLTDD PGMVAIEAWK 840 NTRDNAGFTP EDYARLRGHY SYIHLVQRKI NRVTAKHIVV DIPNNLSDGN SNQKDECATA 900 TFEVSQAEGR LIQPCGMCDR KLAYGSRSRS LLYRPVMFSM VALAAVCVCV ALLFKSSPEV 960 LYIFRPFRWE MLDYGSS

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MEARMGGETQ LFNKSLEWDL NDWKWDGDLF IARPNIPSSN YQFFPLETGN SSSSCSDEVN  60
LGEFEKRSRR RENDENVEYD SASLSLKLGD QGGNPREFGK RTKLNTTSSR AMCQVDDCGV  120
DLSNAKDYHR RHKVCEMHSK SSGALVSNLM QRFCQQCSRF HALEEFDEGK RSCRRRLAGH  180
NKRRRKIQAD SVDNNKTLND VQASANRTNH IEDQDLLCHL LRSLASQGSP YXNHIEDQDL  240
LCHLLRSLAS QGSPYGDNNL SGLLQASSNL LNNRSPSRNS DIVSLVSNGS RRPPIPKEQH  300
FASTLAAQVP QISSDVHAVR LEDVQTESCQ SPGTSFPIQN SSPAYAQARE SSAGRRKLIN  360
FDLNDVYDGS DDSRENLDRS PLPTDRGIGP LECRSWLQQD SQQSSPPSRN SDSASTQSPS  420
SSSSDAQSRT DRIVFKLFGK DPSDFPYVLR AQILDWLSHS PSEIESYIRP GCIVLTIYLR  480
LPESAWEELC CDLSSTLSRL LDVPGDSFWT KGWIYIRMQN QIAFVHDGKL LLDVPLPFET  540
IEHTSILSVK PIAVPVSDRA QFIVKGYNLT KPSTRLLCAL EGSYLVTEAN DEVEHVDGVK  600
KNVELQSINL TCSIPAVSGR GFIEVEDHGL SNGFFPIIIA AEDVCSEIRM LESAIELTTA  660
DYVNGLTNNV EVKSQAMDFI HEMGWLLHRN NLKARLGNSN AVLFPLKRFK WLMEFSIDHD  720
WCAVVRKLLN LLLDGTVGGE ENSFLKVSLS EMGLLHKAVR RNSRPLVELL LTYTPAKVAD  780
ELCSEYQSLL GVKGRFLFRP DSVGPAGLTP LHVAAGIDGY EDVLDSLTDD PGMVAIEAWK  840
NTRDNAGFTP EDYARLRGHY SYIHLVQRKI NRVTAKHIVV DIPNNLSDGN SNQKDECATA  900
TFEVSQAEGR LIQPCGMCDR KLAYGSRSRS LLYRPVMFSM VALAAVCVCV ALLFKSSPEV  960
LYIFRPFRWE MLDYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-31	112	186	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016507693.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A1S4D2Y7	0.0	A0A1S4D2Y7_TOBAC; squamosa promoter-binding-like protein 1
STRING	XP_009773067.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]