PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02549g03010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 712aa    MW: 79635 Da    PI: 6.6413
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02549g03010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.2e-06124144425
                               ---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                               ++C ff++ G+C  GdrC+F H
  Niben101Scf02549g03010.1 124 VPCIFFQQ-GFCLKGDRCSFFH 144
                               79******.***********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1223059IPR000571Zinc finger, CCCH-type
PfamPF156635.6E-113185No hitNo description
SMARTSM003560.00233158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.4556187IPR000571Zinc finger, CCCH-type
SMARTSM003560.736386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.896120147IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-4121146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5123145IPR000571Zinc finger, CCCH-type
PfamPF146080.08125144No hitNo description
Gene3DG3DSA:4.10.1000.109.2E-4125144IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MVGPTPQKLQ IQTPSTAAAP ATLSAEDEAL KRNTDCVYFL ASPLTCKKGS ECEYRHSDVA  60
RLNPRDCWYW LNGSCLNPKC GFRHPPLDGF LGAQVQTPTG SSVPPVASVA PTPNVPYGSG  120
KQGVPCIFFQ QGFCLKGDRC SFFHAPISVP NKAPPHPVPT ASTEKNRFKK AFGGLGKCVQ  180
GKTFSQANTW KSGELPLQAQ PVGKLGTHLS KNDSAFNENV LPRNSVIDVV HHRHKPKSVP  240
PTNGNPVGRS NRVQQSVRFD DHSSIQNKDD DISRELSPGF DVLVDDELRG NDFYHGEDQY  300
GRDAGRNEYD IGRSADYTSV ADNDQDVYHD VYGRDSHDRL PGRSGRVQHR ASSERIQGES  360
AYLERRHYGR AYSPEEVRES DLRHRLSKHK TVNGLRSVIS HDYASEKHVD DRGYQGSRRD  420
QQHLPSHDSS VASRLRGRIK LPSRSSSPTN GTDMRLDRET DRARDRGRLS LERPQLFSQQ  480
GRLRDRIKRR VQEDLGNAGR NNGGPRLRRD ISENNSDFSG PRRLAELKGR KTAETSEQNV  540
DEQQTLGKRK FQKHDSYQQS GGDLSFEGPM PLQEILKRKR SETGMTSDKS EDYQHERKDH  600
SLVTSSISRS RSDLGQKEES DPSSDEKNGP QETLSAGHQS PLHDGANKLE AEEGMIVEEE  660
DDQDPEGHDQ RNYDYEQVDG EDYNLDEGEN ADAGEEYDDG DDFAKKMGVV FS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759890.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A1U7VDI30.0A0A1U7VDI3_NICSY; zinc finger CCCH domain-containing protein 17-like
STRINGXP_009759890.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633