PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02543g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 188aa    MW: 20898.1 Da    PI: 8.3251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02543g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44e-192675255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr ++ +gr++AeIrdp     + +r++lg+f+tae+Aa+a++ a+ +++g
  Niben101Scf02543g00002.1 26 RYRGVRKRP-WGRFAAEIRDPI----KkARVWLGTFDTAEDAARAYDDAASAFHG 75
                              7********.**********72....35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-372689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-312683IPR001471AP2/ERF domain
PROSITE profilePS5103223.422683IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-222684IPR016177DNA-binding domain
PfamPF008476.0E-132675IPR001471AP2/ERF domain
CDDcd000183.53E-192682No hitNo description
PRINTSPR003672.6E-112738IPR001471AP2/ERF domain
PRINTSPR003672.6E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPRRKNSETN RSTSVAFRHP KTDQNRYRGV RKRPWGRFAA EIRDPIKKAR VWLGTFDTAE  60
DAARAYDDAA SAFHGPKAKT NFSVLPPYGQ NRFENFNPPA SSNLSSTVES SSGVRGLHSR  120
VEITRRITPP AVECYSGCDS SSTVVDDNID GDSSSFCKQP LPFDLNLLPP SDDVDDVHVT  180
PCIFSYVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-202782662ATERF1
3gcc_A4e-202782662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767438.11e-110PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_009767439.11e-110PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_009767440.11e-110PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503257.11e-110PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503258.11e-110PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503259.11e-110PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9ZWA22e-28ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBLA0A1U7VYH41e-108A0A1U7VYH4_NICSY; ethylene-responsive transcription factor 3-like
TrEMBLR4WAQ51e-108R4WAQ5_TOBAC; Ethylene response factor #44
STRINGXP_009767438.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14369912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.12e-20ERF domain protein 10
Publications ? help Back to Top
  1. Lehmeyer M, et al.
    Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.
    Plant Biotechnol. J., 2016. 14(1): p. 61-71
    [PMID:25819608]