PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02541g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 682aa    MW: 75045.2 Da    PI: 6.1432
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02541g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.7e-2059114156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++ +++t++q++eLe++F+++++p+ ++r+eL k+lgL+  q+k+WFqN+R+++k
  Niben101Scf02541g02001.1  59 KKQYHRHTQHQIQELEAFFKECPHPDDKQRKELGKRLGLEPLQIKFWFQNKRTQMK 114
                               688999***********************************************998 PP
2START215.41.9e-672464671206
                               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 
                               ela +a++el+++a+ +ep+W +ss    e++ ++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +
  Niben101Scf02541g02001.1 246 ELAVAAMEELIRLAETREPLWIQSSensvEILSEEEYARTFPRGLGpkslgLKSEASRESAVVIMNHINLVEILMDVN-QWTSFF 329
                               57899************************************99888********************************.****** PP

                               S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS
                     START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpS 150
                               a    ka+tlev+s+g      gal +m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+ds ++ +    v R++++pS
  Niben101Scf02541g02001.1 330 AglvsKATTLEVLSTGvagnynGALLVMTAEFQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDSLRPTS---VVSRCRRRPS 411
                               *********************************************************************966...5********* PP

                               EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               g+li++++ng+skvtw+ehv++++r + +++r+lv+sgla+gak+wvatl+rqce+
  Niben101Scf02541g02001.1 412 GCLIRELPNGYSKVTWIEHVEVDDRAVNSIYRPLVNSGLAFGAKRWVATLDRQCER 467
                               ******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-1945115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-2147117IPR009057Homeodomain-like
PROSITE profilePS5007116.53656116IPR001356Homeobox domain
SMARTSM003892.6E-1858120IPR001356Homeobox domain
PfamPF000468.8E-1859114IPR001356Homeobox domain
CDDcd000862.52E-1859117No hitNo description
SuperFamilySSF559611.65E-39236469No hitNo description
PROSITE profilePS5084847.906237470IPR002913START domain
CDDcd088751.37E-128241466No hitNo description
SMARTSM002348.6E-69246467IPR002913START domain
PfamPF018526.0E-57247467IPR002913START domain
Gene3DG3DSA:3.30.530.205.3E-7314467IPR023393START-like domain
SuperFamilySSF559611.37E-10485674No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MFQQTMFDSH NFLLDLSHKT SENEMDLIRD EEFESKSGAD TTELAPSGDD QDPNKRPKKK  60
QYHRHTQHQI QELEAFFKEC PHPDDKQRKE LGKRLGLEPL QIKFWFQNKR TQMKAHHERH  120
ENTQLRNENE KLRAENIRYK EALSTATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPMLNYPQLP SPIPPTRSLD LGVANFVHQL GEIYNAGDLL RSISGSTDAD  240
KPMIIELAVA AMEELIRLAE TREPLWIQSS ENSVEILSEE EYARTFPRGL GPKSLGLKSE  300
ASRESAVVIM NHINLVEILM DVNQWTSFFA GLVSKATTLE VLSTGVAGNY NGALLVMTAE  360
FQVPSPLVPT RENYFVRYCK QHADGTWAVV DVSLDSLRPT SVVSRCRRRP SGCLIRELPN  420
GYSKVTWIEH VEVDDRAVNS IYRPLVNSGL AFGAKRWVAT LDRQCERLAS VMANNIPTGD  480
VITSPEGRKS MLKLAERMVM SFCAGVGAST AHTWTTLSGS GADDVRVMTR KSIDDPGRPP  540
GIVLSAATSF WLPVPTKRSG NSSQNNMLIL QESCTDSTGS YVIYAPVDIA AMNVVLSGGD  600
PDYVALLPSG FAILPDGSAT TNGVGINPES NAAGGSLLTV AFQILVDSVP TAKLSLGSVA  660
TVNSLIKCTV ERIKASIVCE SA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793614.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_009793615.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_009793618.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A1U7Y2Y70.0A0A1U7Y2Y7_NICSY; homeobox-leucine zipper protein MERISTEM L1-like
STRINGXP_009793614.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]